#pangenomics — Public Fediverse posts
Live and recent posts from across the Fediverse tagged #pangenomics, aggregated by home.social.
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🚀 SQZ v0.2.0 released!
🔄 Rewritten core algorithm → faster + more robust (fixes graph edge cases)
✨ New commands:
• compress-partial
• compress-additional
• compress-full (now works on compressed graphs)
• check-compressibility
• test -
Fascinating study!
The methanogen core and pangenome: conservation and variability across biology’s growth temperature extremes
"Increased methanogenic growth temperature is associated with reduced genome size, and thermotolerant organisms...have larger core genome fractions, suggesting that genome size is governed by temperature rather than phylogeny. "
https://academic.oup.com/dnaresearch/article/30/1/dsac048/6862058
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🧐There are still a few seats available for some of our courses in April!
www.physalia-courses.org
#Rstats #Binformatics #rspatial #Pangenomics #GeometricMorphometrics #Metagenomics #MultivariateAnalysis #Metabarcoding #Genomics
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🥁Registration is now open for the course "Analysis of Prokaryotic Pangenomes" with @jomcinerney and Alan Beavan (@mcinerneylab)
🗓️ONLINE, April, 12-14
🔗https://physalia-courses.org/courses-workshops/prokaritotic-pangenomes/