home.social
Sign in Create account

Search

11 results for “spikeinterface”

  1. Ankur Sinha "FranciscoD" @sanjay_ankur ·

    Please join us at the next session of the INCF/OCNS Software WG: Pierre Yger will present : 14 May 2024 at 1500 UTC. More info:

    ocns.github.io/SoftwareWG/2024

    @spikeinterface

    #spikeinterface #incf #ocns #neuroscience
  2. spikeinterface @spikeinterface ·

    📢📢📢
    and community!

    We are thrilled to announce the "Tools and Methods for Next Generation Electrophysiology" event, happening in Edinburgh from May 27-31.

    Registration link:
    forms.gle/6dEdeR7sD7u6u8rU8

    More info on the event webpage:
    spikeinterface.github.io/spike

    #ephys #spikesorting
  3. spikeinterface @spikeinterface ·

    📢📢📢📢📢
    SpikeInterface v0.99.0 has been released on !

    pypi.org/project/spikeinterfac

    Just run this to upgrade your installation:

    >>> pip install --upgrade spikeinterface

    Check out the release notes here:
    spikeinterface.readthedocs.io/

    #neuromastodon #ephys #spikesorting #pypi
  4. spikeinterface @spikeinterface ·

    SpikeInterface v0.97.0 has been released on : pypi.org/project/spikeinterfac

    Just run:
    >>> pip install --upgrade spikeinterface

    The new release includes several new features and updates to the package! A detailed list of changes can be found here:
    spikeinterface.readthedocs.io/

    Happy to everyone!!!

    #neuromastodon #ephys #spikesorting #pypi
  5. spikeinterface @spikeinterface ·

    Happy new year from the SpikeInterface team! 🥳
    2023 will be full of updates and new exciting features!

    If you'd like to support us and broaden the SI community, please add a ⭐️ to our GitHub page 🙏:
    github.com/SpikeInterface/spik

    #spikesorting #electrophysiology
  6. spikeinterface @spikeinterface ·

    SpikeInterface is an framework in to analyze extracellular electrophysiology data and perform .

    We believe that spike sorting development should be a collaborative and community effort and we encourage contributors!

    You can read more in the docs:
    spikeinterface.readthedocs.io/

    Follow a tutorial:
    github.com/SpikeInterface/spik

    Check out the source code:
    github.com/SpikeInterface/spik

    Happy to all!

    #introduction #opensource #python #ephys #spikesorting
  7. El Duvelle @[email protected] ·

    #SpikeSorting question:
    Say I would like to use #Klustakwick (3) - I have the .exe of it - with #SpikeInterface , to pre-sort my spikes. But it is not implemented in the available “sorters”.
    “Klusta” is, which seems somewhat similar (made by the same people?) but also quite different. I really like Klustakwick and would just like to try that.
    Any ideas?
    Where is the best place to ask questions about SpikeInterface? I feel like opening an Issue on the GitHub is a bit overkill… 🙏​

    #spikesorting #klustakwick #spikeinterface
  8. El Duvelle @[email protected] ·

    Hi, is anyone using #Mountainsort with #Neuralynx data? Are you using #SpikeInterface to convert the input data? Would you share your code? 😃​🙏​
    #SpikeSorting

    #mountainsort #neuralynx #spikeinterface #spikesorting
  9. El Duvelle @[email protected] ·

    @chrisXrodgers
    Very good question!
    I have most recently used MountainSort + Phy (via SpikeInterface) and I quite like Phy (for manual refinement of clusters) but not so much Mountainsort - it seemed very conservative. I’ll go back to it soon and tweak the settings a bit. If you want to try it out we have some shared code with the Genzel lab here: github.com/elduvelle/Spikeinte

    But I was also going to try out Kilosort. Do you really not like it?
    Before that KlustaKwik + Tint has been the gold standard for me :) … but maybe it’s time to move on!
    #SpikeSorting #Tetrodes #Electrophysiology

    #spikesorting #tetrodes #electrophysiology
  10. Robert Wolff @[email protected] ·

    Are you interested in the spiking activity of your neuronal cultures, #brain slices, #organoids, etc.?

    Check out our latest publication in STAR Protocols:
    “Protocol for the enhanced analysis of electrophysiological data from high-density multi-electrode arrays with nicespike and spikeNburst”
    doi.org/10.1016/j.xpro.2025.10

    It provides user-friendly graphical and #Python programming interfaces to spike sorting via template matching thanks to #Kilosort and #spikeinterface (@spikeinterface), and subsequent analysis of #spiking and #bursting activity, networks, and synchrony.

    #neuroscience #brainscience #electrophysiology #brainOrganoids

    #brain #organoids #python #kilosort #spikeinterface #spiking
  11. Luigi Petrucco @[email protected] ·

    Spent a month in procrastination to avoid debugging a horribly patched #spikesorting pipeline in MATLAB. Then came to discover @spikeinterface and now I just want to spend my day plotting filtered traces and quality metrics, everything is just so smooth 😍​
    People in #open neuroscience software are pulling out truly amazing things!

    #spikesorting #open