#tskit — Public Fediverse posts

TL;DR There is now a website to advertise the newly launched "State of the ARG" public seminar.
https://yundeng98.github.io/State-of-the-ARG

Next seminar by @jrossibarra will be on November 18, 2026!

See Yun's post on bsky for more details
https://bsky.app/profile/yundeng.bsky.social/post/3mzlc7n6ptk2e

#ARG #TreeSequence #tskit

After solving the issue of non-independence mathematically, we developed an algorithm to quickly compute the quantities we need (using #tskit), allowing us to infer spatial histories from large ARGs.

3/n

@petrelharp I want a #tskit sticker 👋

Unfortunately, I've got to announce a bug in pyslim - if you've been using it, update and read on. #tskit

It's possibly a bad one: pyslim.recapitate( ) has been introducing a short bottleneck to size Ne=1 (!) in most cases.

EDIT: I accidentally pushed out the bugfix release without the fix to the bug.It is now fixed FOR REALS in 1.0.3, now on pip and soon on conda. :facepalm:

Heading off to #Evol2023! If you're looking for a postdoc, come talk to me! Or, if you want a #tskit sticker.

@kitchensjn does log time (as in #tskit) work as a nice intermediate between these two extremes (visibility vs info)?

@kitchensjn ooo, very nice! Can't wait to see it! #tskit