#proteomicsstandardsinitiative — Public Fediverse posts
Live and recent posts from across the Fediverse tagged #proteomicsstandardsinitiative, aggregated by home.social.
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Happy to report that our latest paper is released: https://doi.org/10.1021/acs.analchem.5c02832. About a program I wrote in #rust to annotate spectra with the ability to handle very complex peptide definitions (eg cross-linked, glycans, ambiguous modifications and much more) thanks to ProForma. We think these complex definitions make it functional for many people within the field of mass spec, we use it already for bottom-up, top-down, glycopeptides, XL, and de novo peptides. Additionally it supports reading in many identified peptidoform files (eg MSFragger) to easily visualise data from other sources. The program itself and the underlying libraries are all open source and centered around #ProteomicsStandardsInitiative formats (for now ProForma, mzTab, mzML, mzSpecLib, & mzPAF) for maximum interoperability.
#OpenScience #Proteomics #MassSpectrometry -
Happy to announce the publication of our roadmap for #MzPeak, a truely open, performant format for storage of mass spectrometry data:
Please find the paper at https://pubs.acs.org/doi/full/10.1021/acs.jproteome.5c00435#OpenScience #TeamMassSpec #Proteomics #ProteomicsStandardsInitiative
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We just had the kickoff meeting for the #ProteomicsStandardsInitiative #AI working group yesterday. I think it went well, but we'd also like to get more input on what our scope and mandate should be (and as always more volunteers). You can watch the recording here: https://cloud.samwein.com/s/oyjG4ijeEDbiSRF