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#mosdepth — Public Fediverse posts

Live and recent posts from across the Fediverse tagged #mosdepth, aggregated by home.social.

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  1. Pierre Lindenbaum @[email protected] ·

    github.com/fulcrumgenomics/rik "Spiritual successor to picard for sequencing qc "

    "mosdepth is well known for being the fastest WGS coverage tool... until now. With both tools configured as closely to each other as possible, Riker is faster at every coverage and every thread count we measured — by 1.2–1.5×, with the biggest multipliers at low coverage."

    #bioinformatics #mosdepth #coverage #hts

    #bioinformatics #mosdepth #coverage #hts
  2. MultiQC @[email protected] ·

    I'm very happy to announce that MultiQC v1.15 was just released! 🎉

    github.com/ewels/MultiQC/relea

    It comes with 🐛 fixes for #10xGenomics #CellRanger fix, #mosdepth tweaks, and supports a new tool #Librarian to predict library type from FastQ base composition 🕵🏻‍♂️ 🧬plus much more!

    Also included is a ~5-7 fold speed-up in the initial file search. This will shave off a chunk of run-time off for people generating big reports 🏎💨

    Thanks to Vlad Savelyev for this with a hat tip to Pontus Höjer at the end 🙏🏻

    #10xgenomics #cellranger #mosdepth #librarian