#eubic — Public Fediverse posts

Hello #Proteomics !

Thinking about a better mzML to store proteomics data, but not convinced by the #parquet approach, I've converted it into #CBOR :
* Smaller data files (only 66% of the mzML original file) for the exact same data
* Faster to read (25s for a big mzML vs 18s in mzcbor on the same computer)
* Very quick random access to spectra (24.6577 ms for mzML vs 786.731 μs for mzcbor for the same operation using index)

I'd like to share it if you are interested at #eubIC #eubic2026

Thanks for the presentation of the #proteobench work by Marie Locard-Pollet yesterday !

@pappso is involved in this work

#EUPA 2025
#EUBIC

Hello #proteomics,

see you soon at #EUPA 2025 meeting next week in #saintmalo .

@pappso will be there with many posters and short coms.

stay tuned ;)

https://eupa2025-stmalo.fr/en/

#EUBIC #proteobench

The #proteobench project from #eubic is evolving fast.

There are new results available online for the DDA module.

We present our results for i2MassChroQ #PAPPSO compared to other workflows in #proteomics :

http://pappso.inrae.fr/en/news/2024/12/i2masschroq-results-in-proteobench

RT @EU_YPIC: Did you already register for #EuPA ECR day on the 5th oct., 2-5 CEST? Meet the ECR awardees, network with other ECRs and vote for the best science slam video. Don't forget to upload your own 3-min video until 28th sept. to win a travel grant up to 1000 €! #ECR #EuBIC #YPIC