#copasi — Public Fediverse posts

I spent a few months rebuilding a classic model from just its description in the original paper (von Dassow et al. 2000). Now I’ve added it to BioModels in standard formats so that everyone can use it https://www.ebi.ac.uk/biomodels/MODEL2304060001

I also wrote a manuscript about the experience and reproducibility. Soon to post as preprint.
#openscience #SBML #systemsbiology #COPASI @copasi

I spent a few months rebuilding a classic model from just its description in the original paper (von Dassow et al. 2000). Now I’ve added it to BioModels in standard formats so that everyone can use it https://www.ebi.ac.uk/biomodels/MODEL2304060001

I also wrote a manuscript about the experience and reproducibility. Soon to post as preprint.
#openscience #SBML #systemsbiology #COPASI @copasi

I spent a few months rebuilding a classic model from just its description in the original paper (von Dassow et al. 2000). Now I’ve added it to BioModels in standard formats so that everyone can use it https://www.ebi.ac.uk/biomodels/MODEL2304060001

I also wrote a manuscript about the experience and reproducibility. Soon to post as preprint.
#openscience #SBML #systemsbiology #COPASI @copasi

I spent a few months rebuilding a classic model from just its description in the original paper (von Dassow et al. 2000). Now I’ve added it to BioModels in standard formats so that everyone can use it https://www.ebi.ac.uk/biomodels/MODEL2304060001

I also wrote a manuscript about the experience and reproducibility. Soon to post as preprint.
#openscience #SBML #systemsbiology #COPASI @copasi

I spent a few months rebuilding a classic model from just its description in the original paper (von Dassow et al. 2000). Now I’ve added it to BioModels in standard formats so that everyone can use it https://www.ebi.ac.uk/biomodels/MODEL2304060001

I also wrote a manuscript about the experience and reproducibility. Soon to post as preprint.
#openscience #SBML #systemsbiology #COPASI @copasi

A recent paper in eLife shows that popular cell fixation methods can create artifacts in identifying condensates
https://doi.org/10.7554/eLife.79903

It uses COPASI and its python version, BasiCO, to demonstrate some of their findings.

Nice to see that one of their supplements is a jupyter notebook using BasiCO and COPASI

This and another 1200 papers that used COPASI are listed on our website:
https://copasi.org/Research/

#CellBiology #SystemsBiology #COPASI #jupyter #modeling #simulation

A recent paper in eLife shows that popular cell fixation methods can create artifacts in identifying condensates
https://doi.org/10.7554/eLife.79903

It uses COPASI and its python version, BasiCO, to demonstrate some of their findings.

Nice to see that one of their supplements is a jupyter notebook using BasiCO and COPASI

This and another 1200 papers that used COPASI are listed on our website:
https://copasi.org/Research/

#CellBiology #SystemsBiology #COPASI #jupyter #modeling #simulation

A recent paper in eLife shows that popular cell fixation methods can create artifacts in identifying condensates
https://doi.org/10.7554/eLife.79903

It uses COPASI and its python version, BasiCO, to demonstrate some of their findings.

Nice to see that one of their supplements is a jupyter notebook using BasiCO and COPASI

This and another 1200 papers that used COPASI are listed on our website:
https://copasi.org/Research/

#CellBiology #SystemsBiology #COPASI #jupyter #modeling #simulation

A recent paper in eLife shows that popular cell fixation methods can create artifacts in identifying condensates
https://doi.org/10.7554/eLife.79903

It uses COPASI and its python version, BasiCO, to demonstrate some of their findings.

Nice to see that one of their supplements is a jupyter notebook using BasiCO and COPASI

This and another 1200 papers that used COPASI are listed on our website:
https://copasi.org/Research/

#CellBiology #SystemsBiology #COPASI #jupyter #modeling #simulation

A recent paper in eLife shows that popular cell fixation methods can create artifacts in identifying condensates
https://doi.org/10.7554/eLife.79903

It uses COPASI and its python version, BasiCO, to demonstrate some of their findings.

Nice to see that one of their supplements is a jupyter notebook using BasiCO and COPASI

This and another 1200 papers that used COPASI are listed on our website:
https://copasi.org/Research/

#CellBiology #SystemsBiology #COPASI #jupyter #modeling #simulation