#biohack25eu — Public Fediverse posts
Live and recent posts from across the Fediverse tagged #biohack25eu, aggregated by home.social.
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"Improving package annotation in metabolomics andproteomics via robust, ontology-driven LLM integration" https://doi.org/10.37044/osf.io/x5v6b_v1
"At BioHackathon Europe 2025, our team explored how Large Language Models (LLMs) can assist this process through the Model Context Protocol (MCP), an emerging open standard that specifies how LLMs call external functions, using metabolomics as a domain use case. We developed an MCP-based workflow that grounds tool descriptions in the EDAM ontology (Ison et al., 2013) (Black et al., 2022), improving reproducibility and semantic precision." https://osf.io/preprints/biohackrxiv/x5v6b_v1
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"BioHackEU25 report: Scop3PTM Next - Interactive visualization of PTM data across sequence, structure and interactions" https://doi.org/10.37044/osf.io/xvrud_v1
"Scop3PTM Next was developed during BioHackathon Europe 2025 to address the need for integrated visualization of protein-centric data across sequence (and modification), interaction and structural contexts." https://index.biohackrxiv.org/2025/11/26/xvrud.html