#teamproteomics — Public Fediverse posts
Live and recent posts from across the Fediverse tagged #teamproteomics, aggregated by home.social.
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Anyone used plexDia with DiaNN/FragPipe on SILAC dia data? #TeamProteomics
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I wrote up the steps needed to analyze a two species, 45 sample (21 rhesus monkey and 24 human), 3 TMTpro plexes, 20-fractions per plex quantitative proteomics experiment. The samples are amniotic fluid at multiple gestational ages. The blog post is at: https://github.com/pwilmart/Human_rhesus_TMT.
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I wrote up the steps needed to analyze a two species, 45 sample (21 rhesus monkey and 24 human), 3 TMTpro plexes, 20-fractions per plex quantitative proteomics experiment. The samples are amniotic fluid at multiple gestational ages. The blog post is at: https://github.com/pwilmart/Human_rhesus_TMT.
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@pwilmart
And I keep waiting for an alternative. -
@pwilmart
And I keep waiting for an alternative. -
I have been thinking what is the best way to reuse TMT and LFQ data together for Tissue baseline expression. Snyder group published (https://www.sciencedirect.com/science/article/pii/S0092867420310783) but their results do not correlate at all with other studies IBAQ-based studies from Kuster and others. Would be nice to know from TMT experts about how TMT quant combined with LFQ methods. Ideas #TeamMassSpectrometry #TeamProteomics @RonBeavis @neely @maccoss @pwilmart @jyates @proteomicsnews @metamorpheus ?
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I have been thinking what is the best way to reuse TMT and LFQ data together for Tissue baseline expression. Snyder group published (https://www.sciencedirect.com/science/article/pii/S0092867420310783) but their results do not correlate at all with other studies IBAQ-based studies from Kuster and others. Would be nice to know from TMT experts about how TMT quant combined with LFQ methods. Ideas #TeamMassSpectrometry #TeamProteomics @RonBeavis @neely @maccoss @pwilmart @jyates @proteomicsnews @metamorpheus ?