#vhp4safety — Public Fediverse posts

Some time ago I wrote a short write up about @vhp4safety videos, how to follow the RSS etc. It is now online: https://docs.vhp4safety.nl/en/latest/tutorials/peertube/intro.html

#vhp4safety

the second #vhp4safety hackathon day has started. So many improvements :)

nice group of 17 people hacking very hard! tons of improvements already live on https://platform.vhp4safety.nl/ :)

#vhp4safety #hackathon

getting ready for (already) the 7th #VHP4Safety #hackathon!

VHP4Safety is NWO-funded research project, co-creating a virtual human (platform) to host digital twins, to support toxicology research and risk assessment. Why? to replace as much as possible, if not all, animal testing.

And the great thing is, a lot of it actually is #openscience !

Want to have a preview? Visit https://platform.vhp4safety.nl/

Ozan Cinar and @Marvin will present tomorrow about the #VHP4Safety solutions for general risk assessment without animal experiments

You can still register: https://us02web.zoom.us/webinar/register/WN_Zp2MIuZMRL-HAehsViIokg#/registration

#safety #toxicology #nam

did I already share this? my colleague Prof. Chris Evelo is looking for the #VHP4Safety (https://vhp4safety.nl/) project for a postdoc for the vacancy "Model Steward for the VHP4Safety project" https://vacancies.maastrichtuniversity.nl/job/Maastricht-Model-Steward-for-the-VHP4Safety-project/826423002/

"As Model Steward, you will help structure and integrate mathematical models used in toxicology and health risk assessment. These include, for example, models for QSAR, PBPK models, and quantitative AOPs. Your goal is to make these models FAIR."

found two @magnusmanske's Mix'n'Match catalogs important to #VHP4Safety

- CoSing ingredients: https://mix-n-match.toolforge.org/#/catalog/707
- ECHA InfoCard: https://mix-n-match.toolforge.org/#/catalog/1521

#openscience #chemistry #toxicology

The second day of the 4th #VHP4Safety hackathon has started. I am in a team that is trying to create a product that will visualize an AOP and map experimental and computed data on top of that. We're thinking of data from the Human Protein Atlas, QSAR models for MIE-protein binding affinities, and link to molecular pathways from @wikipathways

So, back to hacking!

#openscience #hackathon

we have five problem statements we will work in during this #VHP4Safety #hackathon

@Marvin is now starting a demo of the CAP, central access point #VHP4Safety

The 4th #VHP4Safety hackathon is starting! Theme this time is the User Interface. VHP4Safety is about a next generation safety assessment of chemicals, based on #FAIR and #OpenScience

new paper: "Making PBPK models more reproducible in practice" https://doi.org/10.1093/bib/bbae569

"We make a proposal aiming to harmonize abbreviations used in PBPK models.
To illustrate these recommendations, we present an original and reproducible PBPK model code in MATLAB, alongside an example of
MATLAB code converted to Systems Biology Markup Language format using MOCCASIN."

#SystemsBiology #bioinformatics #matlab #SBML #VHP4Safety

Fwd: "Advancing AI in #toxicology Insights from the Third #VHP4Safety Hackathon" https://www.sciencrew.com/c/9347/a/335221636?title=Advancing_AI_in_Toxicology_Insights_from_the_Third_VHP4Safety_H

hacking on a BioCypher adapter for the #VHP4Safety compound wiki

will the real Hygromycin B please stand up? #biology #chemistry #vhp4safety

De inschrijving voor het VHP4Safety mini-symposium rondom de promotie van Marvin Martens op 29 januari is geopend! https://lnkd.in/dmgHTbUH (Beperkt aantal plaatsen) Met sprekers: Chris Evelo (Marvin's promotor), Holly Mortensen, Anne Kienhuis, Joost Beltman en Mathieu Vinken. #VHP4Safety #AOPWiki #wikipathways

@Marvin's PhD thesis is the result of work in the #OpenRiskNet and #EUToxRisk projects

@fnielsen's Synia is cool new #wikidata technology! Here in action (https://kb.cloud.vhp4safety.nl/) for #VHP4Safety, hosted on GitHub (https://github.com/vhP4Safety/synia), backed by a Wikibase.Cloud (https://compoundcloud.wikibase.cloud/)

Today is the first Virtual Human Platform for Safety Hackathon :) #VHPHack #VHP4Safety

Next meeting this week: #VHP4Safety

I had a #VHP4Safety stakeholder meeting first, but now at the Disease Maps Community meeting in Maastricht

Sad I missed the first three talks. But Marek Ostaszewski's presentation was very interesting #DMCM2023