#teamtomo — Public Fediverse posts

This year again I was lucky to be able to attend the #CCPEM Spring Symposium in person.

So much exciting science is going on in the #cryoEM and #cryoET #teamTomo fields!

I was especially impressed with the progress in time-resolved perturbation and vitrification for single-particle cryoEM.

Just dropped $1200 to upgrade one of my servers to 512 GB mem. How’s your day?

#teamtomo #cryoet

New Title Alert: Follow_Relion_Gracefully- a complete dashboard for easy interaction with your cryo-EM data in Relion, now with full #teamtomo support!

Learn more here: https://github.com/dzyla/Follow_Relion_gracefully

#SBGridsoftware #StructuralBiology

One highlight from Friday that I forgot: Alister Burt's talk on his efforts to build #TeamTomo, a set of community-supported software packages and metadata standards for #cryoET. This is difficult work, and less rewarding for those in academia, but so essential. It's great to see progress on this front.

The other great news from Alister's talk: Warp is now supported on Linux!

Finally, I'll remember his advice "think about geometry, and use it if you can" when assigning initial particle orientations for subtomogram averaging.

#CCPEM #CryoEM

#TeamTomo is having a competition to annotate #cryoET tomograms: https://cryoetdataportal.czscience.com/competition

This is a good initiative! Especially the metadata format standardization part. I hope several good 3D particle picking programs will emerge from this.

#StructuralBiology

https://www.biorxiv.org/content/10.1101/2024.05.30.596601v1

We made Surforama to support particle picking on surfaces, particularly for cryoET. You can visualize surfaces in the tomogram to localize, label, and analyze proteins or other particle types.

It runs as a @napari plugin and in standalone mode.

#teamtomo

Come see our deeper dive into human chromatin in situ at #cellbio2023. #teamtomo study led by Jon Chen and Tingsheng Liu. Poster P2005, Board B281, Monday Dec 4. Preprint: https://www.biorxiv.org/content/10.1101/2023.07.31.551204v1.full

Cool article about the current state of #cryoET #teamTOMO

Catching proteins at play: the method revealing the cell’s inner mysteries
https://www.nature.com/articles/d41586-023-02909-7

Postdoctoral Associate

University of Pittsburgh

Come join us for an exciting funded opportunity to explore the cell biology of #bipolar disorder and push the boundaries of imaging!

See the full job description on jobRxiv: https://jobrxiv.org/job/university-of-pittsburgh-27778-postdoctoral-associate-2/?feed_id=58234

#ScienceJobs #hiring #research #cryo-EM #dopamine #teamtomo #neuroscience #mitoc...
https://jobrxiv.org/job/university-of-pittsburgh-27778-postdoctoral-associate-2/?feed_id=58234

Catch up on the newest findings from the Haselbach Lab in collaboration with @univienna ⤵️
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RT @haselbachlab
First result in our tomography software endeavor. Great collaboration with the university of Vienna. #teamTomo https://twitter.com/hararpavol/status/1643432893996253188
https://twitter.com/HaselbachLab/status/1643483336264785920

I reprocessed the T. kivui 70S ribosomes (EMPIAR-11058) with #RELION-4 to get a ~7 Å map in situ 🤩

This map is now deposited @EMDB_EMPIAR as EMD-16451:
https://www.ebi.ac.uk/emdb/EMD-16451

#OpenSoftwareAcceleratesScience
#TeamTomo #CryoET

😍🤯
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RT @MaxGemmer
Very happy to share our recent work on protein biogenesis at the ER membrane. We analyzed 150,000 ribosomes from 1000+ tomograms of ER-derived vesicles to visualize ribosome intermediates and their downstream translocon machinery.
1/

#TeamTomo #CryoEM
https://www.nature.com/articles/s41586-022-05638-5
https://twitter.com/MaxGemmer/status/1618495422988947457

#Introduction My name is Dennis and I'm a biophysics postdoc in the Justin Taraska lab at the NHLBI. I currently work on the computational side of #cryoET data from isolated plasma membranes samples. I'm very interested in scientific software development and how usability and transparency can be improved! #teamtomo

hey #TeamTomo, Michael Grange is hiring a postdoc and an RA to work on pFIB and tomography.

#cryoEM #cryoET #structuralbiology

See his post from the birdsite below:

Michael Grange
@mcgrange
·
Dec 1, 2022
I have two positions in my group open
@RosFrankInst

Senior PDRA, #pFIB tissues for #CryoET.

https://opportunities.rfi.ac.uk/vacancy/senior-postdoctoral-research-associate-508029.html

and a RA to come help us with our workflows, with potential for machine dev.

https://opportunities.rfi.ac.uk/vacancy/research-assistant-508024.html

Enquiries welcome! Deadline 9th Jan

RTs welcome 😊

#Introduction I am a postdoctoral scientist working on Cryo-ET image processing in the Carazo Lab in Madrid @CNB_CSIC. We develop new methodologies to push cryo-ET to the stars #teamtomo #CryoEM #StructuralBiology

@MitosisLab is the first user I've seen linking to #OpenAccess #CryoEM data their lab shares. Check them out if you haven't, esp #TeamTomo

Hi #TeamTomo!! Do you like plants?🍀 Do you like #CryoEM and #CryoET?❄️🔬 Do you want to live in beautiful Copenhagen⛵️🇩🇰 and take trips to beautiful Basel🏔️🇨🇭?

If so, then please apply to this postdoc position to work with us and Kristian Frandsen & Staffan Persson, intrepid explorers of Cellulose Synthase.

👉 https://employment.ku.dk/faculty/?show=158020

You would help us operate and maintain our microscopes [2 Krioses (1 with Bioquantum K3, the other w/ SelectrisX F4i), 1 Glacios (K2) and 1 Talos (side-entry, CetaD)], support our portfolio of research and drug discovery projects mainly with single-tilt data collection and processing, but also developing #cryoET workflows and experiments for targets of interest. It’s early days for #teamtomo in drug discovery, but there’s a bright future ahead - come help us shape it!

I have a new vacancy in my team for cryoEM scientist interested in developing cryoFIB milling approaches and cellular cryoET. As always, we will be pushing the boundaries with cryoET #teamtomo. Position is based at Oxford, UK. Please help spread the word. https://jobs.thermofisher.com/i/global/en/job/222364BR/Applications-Scientist-Cryo-Tomography

Pretty happy today to have found a bug in my new subtomogram averaging #teamtomo code that had been messing up results for months now! 🥳