#synteny — Public Fediverse posts

Pipeline release! nf-core/pairgenomealign v2.2.2 - nf-core/pairgenomealign v2.2.2 – Juicy!
Pairwise genome comparison pipeline using the LAST software to align a list of query genomes to a target genome, and plot the results
Please see the changelog: https://github.com/nf-core/pairgenomealign/releases/tag/2.2.2

#comparativegenomics #dotplot #genomics #last #pairwisealignment #synteny #wholegenomealignment #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/pairgenomealign v2.2.1 - nf-core/pairgenomealign v2.2.1 – C’est quoi ça?!

Please see the changelog: https://github.com/nf-core/pairgenomealign/releases/tag/2.2.1

#comparativegenomics #dotplot #genomics #last #pairwisealignment #synteny #wholegenomealignment #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/pairgenomealign v2.2.0 - nf-core/pairgenomealign v2.2.0 – Chagara ponzu!

Please see the changelog: https://github.com/nf-core/pairgenomealign/releases/tag/2.2.0

#comparativegenomics #dotplot #genomics #last #pairwisealignment #synteny #wholegenomealignment #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/pairgenomealign v2.1.0 - nf-core/pairgenomealign v2.1.0 – Goya champuru!

Please see the changelog: https://github.com/nf-core/pairgenomealign/releases/tag/2.1.0

#comparativegenomics #dotplot #genomics #last #pairwisealignment #synteny #wholegenomealignment #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/pairgenomealign v2.0.0 - nf-core/pairgenomealign v2.0.0 – Naga imo!

Please see the changelog: https://github.com/nf-core/pairgenomealign/releases/tag/2.0.0

#comparativegenomics #dotplot #genomics #last #pairwisealignment #synteny #wholegenomealignment #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/pairgenomealign v1.1.1 - nf-core/pairgenomealign v1.1.1 – Kani nabe!

Please see the changelog: https://github.com/nf-core/pairgenomealign/releases/tag/1.1.1

#comparativegenomics #dotplot #genomics #last #pairwisealignment #synteny #wholegenomealignment #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/pairgenomealign v1.1.0 - nf-core/pairgenomealign v1.1.0 – Nattou Maki!

Please see the changelog: https://github.com/nf-core/pairgenomealign/releases/tag/1.1.0

#comparative-genomics #dot-plot #genomics #last #pairwise-alignment #synteny #whole-genome-alignment #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/pairgenomealign v1.0.0 - nf-core/pairgenomealign v1.0.0 – Sweet Potato!

Please see the changelog: https://github.com/nf-core/pairgenomealign/releases/tag/1.0.0

#comparative-genomics #dot-plot #genomics #last #pairwise-alignment #synteny #whole-genome-alignment #nfcore #openscience #nextflow #bioinformatics

Reconstructing the #TreeOfLife is a central goal in biology. @jlsteenwyk & Nicole King discuss the use of #synteny for reconstructing the ToL and propose a roadmap for conducting rigorous & accurate synteny-based #phylogenomic analysis #PLOSBiology https://plos.io/3Vavczo

New paper from my old group:

Long-read genome assemblies of 33 species of eucalypt (gum tree) from across Australia, encompassing ~70My of evolution. Key finding: macrosynteny is preserved, but microsynteny rampantly disrupted. Cool result given the propensity for inter-specific hybridization and gene flow.

Preprint here: https://www.biorxiv.org/content/10.1101/2023.04.19.537464v1
Feel free to reach out with any Q's!

#preprint #genome #trees #eucalyptus #genomics #genomeassembly #biorxiv #botany #synteny #structuralvariation