#scrna_seq — Public Fediverse posts

Just published: UMAPs have become a very popular tool for visualizing high-dimensional data in biology, but they have significant drawbacks. In https://doi.org/10.1186/s12859-024-05927-y Kitanovski et al describe scBubbletree (sc because our focus is on single cell data) as a better alternative: it is easier to interpret, quantitative, and allows for integration of different types of data. The method is implemented in a free, open source R package (https://bioconductor.org/packages/release/bioc/html/scBubbletree.html). I am sure that this type of quantitative visualization is beneficial beyond single cell gene expression data.

#umap #scRNA_seq #bioinformatics

Just published: UMAPs have become a very popular tool for visualizing high-dimensional data in biology, but they have significant drawbacks. In https://doi.org/10.1186/s12859-024-05927-y Kitanovski et al describe scBubbletree (sc because our focus is on single cell data) as a better alternative: it is easier to interpret, quantitative, and allows for integration of different types of data. The method is implemented in a free, open source R package (https://bioconductor.org/packages/release/bioc/html/scBubbletree.html). I am sure that this type of quantitative visualization is beneficial beyond single cell gene expression data.

#umap #scRNA_seq #bioinformatics

PhD

Justus Liebig University Giessen Germany

Interested in specializing in macrophage biology and utilizing cutting-edge technologies? Apply now for this PhD opportunity.

See the full job description on jobRxiv: https://jobrxiv.org/job/justus-liebig-university-giessen-germany-27778-phd/?feed_id=75704

#bioinformatics #codex #flow_cytometry #macrophage #scrna_seq #ScienceJobs #hiring #research
https://jobrxiv.org/job/justus-liebig-university-giessen-germany-27778-phd/?feed_id=75704

PhD

Justus Liebig University Giessen Germany

Interested in specializing in macrophage biology and utilizing cutting-edge technologies? Apply now for this PhD opportunity.

See the full job description on jobRxiv: https://jobrxiv.org/job/justus-liebig-university-giessen-germany-27778-phd/?feed_id=75704

#bioinformatics #codex #flow_cytometry #macrophage #scrna_seq #ScienceJobs #hiring #research
https://jobrxiv.org/job/justus-liebig-university-giessen-germany-27778-phd/?feed_id=75704

PhD

Justus Liebig University Giessen Germany

Interested in specializing in macrophage biology and utilizing cutting-edge technologies? Apply now for this PhD opportunity.

See the full job description on jobRxiv: https://jobrxiv.org/job/justus-liebig-university-giessen-germany-27778-phd/?feed_id=75704

#bioinformatics #codex #flow_cytometry #macrophage #scrna_seq #ScienceJobs #hiring #research
https://jobrxiv.org/job/justus-liebig-university-giessen-germany-27778-phd/?feed_id=75704

PhD

Justus Liebig University Giessen Germany

Interested in specializing in macrophage biology and utilizing cutting-edge technologies? Apply now for this PhD opportunity.

See the full job description on jobRxiv: https://jobrxiv.org/job/justus-liebig-university-giessen-germany-27778-phd/?feed_id=75704

#bioinformatics #codex #flow_cytometry #macrophage #scrna_seq #ScienceJobs #hiring #research
https://jobrxiv.org/job/justus-liebig-university-giessen-germany-27778-phd/?feed_id=75704

PhD

Justus Liebig University Giessen Germany

Interested in specializing in macrophage biology and utilizing cutting-edge technologies? Apply now for this PhD opportunity.

See the full job description on jobRxiv: https://jobrxiv.org/job/justus-liebig-university-giessen-germany-27778-phd/?feed_id=75704

#bioinformatics #codex #flow_cytometry #macrophage #scrna_seq #ScienceJobs #hiring #research
https://jobrxiv.org/job/justus-liebig-university-giessen-germany-27778-phd/?feed_id=75704

PhD

Justus Liebig University Giessen Germany

Interested in specializing in macrophage biology and utilizing cutting-edge technologies? Apply now for this PhD opportunity.

See the full job description on jobRxiv: https://jobrxiv.org/job/justus-liebig-university-giessen-germany-27778-phd/?feed_id=75459

#bioinformatics #codex #flow_cytometry #macrophage #scrna_seq #ScienceJobs #hiring #research
https://jobrxiv.org/job/justus-liebig-university-giessen-germany-27778-phd/?feed_id=75459

PhD

Justus Liebig University Giessen Germany

Interested in specializing in macrophage biology and utilizing cutting-edge technologies? Apply now for this PhD opportunity.

See the full job description on jobRxiv: https://jobrxiv.org/job/justus-liebig-university-giessen-germany-27778-phd/?feed_id=75459

#bioinformatics #codex #flow_cytometry #macrophage #scrna_seq #ScienceJobs #hiring #research
https://jobrxiv.org/job/justus-liebig-university-giessen-germany-27778-phd/?feed_id=75459

PhD

Justus Liebig University Giessen Germany

Interested in specializing in macrophage biology and utilizing cutting-edge technologies? Apply now for this PhD opportunity.

See the full job description on jobRxiv: https://jobrxiv.org/job/justus-liebig-university-giessen-germany-27778-phd/?feed_id=75459

#bioinformatics #codex #flow_cytometry #macrophage #scrna_seq #ScienceJobs #hiring #research
https://jobrxiv.org/job/justus-liebig-university-giessen-germany-27778-phd/?feed_id=75459

PhD

Justus Liebig University Giessen Germany

Interested in specializing in macrophage biology and utilizing cutting-edge technologies? Apply now for this PhD opportunity.

See the full job description on jobRxiv: https://jobrxiv.org/job/justus-liebig-university-giessen-germany-27778-phd/?feed_id=75459

#bioinformatics #codex #flow_cytometry #macrophage #scrna_seq #ScienceJobs #hiring #research
https://jobrxiv.org/job/justus-liebig-university-giessen-germany-27778-phd/?feed_id=75459

PhD

Justus Liebig University Giessen Germany

Interested in specializing in macrophage biology and utilizing cutting-edge technologies? Apply now for this PhD opportunity.

See the full job description on jobRxiv: https://jobrxiv.org/job/justus-liebig-university-giessen-germany-27778-phd/?feed_id=75459

#bioinformatics #codex #flow_cytometry #macrophage #scrna_seq #ScienceJobs #hiring #research
https://jobrxiv.org/job/justus-liebig-university-giessen-germany-27778-phd/?feed_id=75459

New tool decodes complex, #single_cell #genomic data.

#scLENS #scRNA_seq

https://phys.org/news/2024-04-tool-decodes-complex-cell-genomic.html

New tool decodes complex, #single_cell #genomic data.

#scLENS #scRNA_seq

https://phys.org/news/2024-04-tool-decodes-complex-cell-genomic.html

New tool decodes complex, #single_cell #genomic data.

#scLENS #scRNA_seq

https://phys.org/news/2024-04-tool-decodes-complex-cell-genomic.html

New tool decodes complex, #single_cell #genomic data.

#scLENS #scRNA_seq

https://phys.org/news/2024-04-tool-decodes-complex-cell-genomic.html

Need to integrate #SingleCellOmics datasets? This new paper by SIB's @Carmona et al.
introduces STACAS, a flexible framework to reduce batch effect in #scrna_seq data by taking advantage of prior cell type knowledge https://www.nature.com/articles/s41467-024-45240-z

Need to integrate #SingleCellOmics datasets? This new paper by SIB's @Carmona et al.
introduces STACAS, a flexible framework to reduce batch effect in #scrna_seq data by taking advantage of prior cell type knowledge https://www.nature.com/articles/s41467-024-45240-z

Need to integrate #SingleCellOmics datasets? This new paper by SIB's @Carmona et al.
introduces STACAS, a flexible framework to reduce batch effect in #scrna_seq data by taking advantage of prior cell type knowledge https://www.nature.com/articles/s41467-024-45240-z

Need to integrate #SingleCellOmics datasets? This new paper by SIB's @Carmona et al.
introduces STACAS, a flexible framework to reduce batch effect in #scrna_seq data by taking advantage of prior cell type knowledge https://www.nature.com/articles/s41467-024-45240-z

Need to integrate #SingleCellOmics datasets? This new paper by SIB's @Carmona et al.
introduces STACAS, a flexible framework to reduce batch effect in #scrna_seq data by taking advantage of prior cell type knowledge https://www.nature.com/articles/s41467-024-45240-z

'Invisible' #cell types and #gene #expression revealed with #sequencing #data analysis improvement .

#transcriptome #scRNA_seq

https://phys.org/news/2023-09-invisible-cell-gene-revealed-sequencing.html

'Invisible' #cell types and #gene #expression revealed with #sequencing #data analysis improvement .

#transcriptome #scRNA_seq

https://phys.org/news/2023-09-invisible-cell-gene-revealed-sequencing.html