#reproduciblescience — Public Fediverse posts

Quarto Manuscript makes me almost want to write scientific articles again. This could potentially change the process quite a lot. But maybe there is also a good use for it in internal project reports. https://quarto.org/docs/manuscripts/ #quarto #reproduciblescience #shareyourcode

Quarto Manuscript makes me almost want to write scientific articles again. This could potentially change the process quite a lot. But maybe there is also a good use for it in internal project reports. https://quarto.org/docs/manuscripts/ #quarto #reproduciblescience #shareyourcode

Quarto Manuscript makes me almost want to write scientific articles again. This could potentially change the process quite a lot. But maybe there is also a good use for it in internal project reports. https://quarto.org/docs/manuscripts/ #quarto #reproduciblescience #shareyourcode

Quarto Manuscript makes me almost want to write scientific articles again. This could potentially change the process quite a lot. But maybe there is also a good use for it in internal project reports. https://quarto.org/docs/manuscripts/ #quarto #reproduciblescience #shareyourcode

Just updated my 'Species Distribution Modeling in GRASS' reader 📘. Right in time for our upcoming module for my 'Earth, data-analysis and visualization students at #HASgreenacademy 😅

Mostly small changes about the organization of results. The least exciting part of modeling, but it can absolutely mess up your workflow if not done right. Hopefully this lands before students learn that the hard way. 🤔

https://ecodiv.earth/TutorialsNotes/sdmingrassgis/

#SDM #Teaching #ReproducibleScience #GIS #GRASSGIS #FOSS #osgeo

Just updated my 'Species Distribution Modeling in GRASS' reader 📘. Right in time for our upcoming module for my 'Earth, data-analysis and visualization students at #HASgreenacademy 😅

Mostly small changes about the organization of results. The least exciting part of modeling, but it can absolutely mess up your workflow if not done right. Hopefully this lands before students learn that the hard way. 🤔

https://ecodiv.earth/TutorialsNotes/sdmingrassgis/

#SDM #Teaching #ReproducibleScience #GIS #GRASSGIS #FOSS #osgeo

@pjotrprins There's some really interesting knowledge for anyone using #guix in here! Nice job team! I just read some about #containers and #postgres - super useful for general users as well as #reproduciblescience

@pjotrprins There's some really interesting knowledge for anyone using #guix in here! Nice job team! I just read some about #containers and #postgres - super useful for general users as well as #reproduciblescience

Quarto Manuscript makes me almost want to write scientific articles again. This could potentially change the process quite a lot. But maybe there is also a good use for it in internal project reports. https://quarto.org/docs/manuscripts/ #quarto #reproduciblescience #shareyourcode

Quarto Manuscript makes me almost want to write scientific articles again. This could potentially change the process quite a lot. But maybe there is also a good use for it in internal project reports. https://quarto.org/docs/manuscripts/ #quarto #reproduciblescience #shareyourcode

Quarto Manuscript makes me almost want to write scientific articles again. This could potentially change the process quite a lot. But maybe there is also a good use for it in internal project reports. https://quarto.org/docs/manuscripts/ #quarto #reproduciblescience #shareyourcode

Quarto Manuscript makes me almost want to write scientific articles again. This could potentially change the process quite a lot. But maybe there is also a good use for it in internal project reports. https://quarto.org/docs/manuscripts/ #quarto #reproduciblescience #shareyourcode

Image prevalidation helps make science reproducible. At MDC, our Engineering and Support Unit is leading the way. Read how they support open science with tools and training – plus an interview with Ella Bahry 👉 https://bit.ly/why-image-data-integrity-matters

@MDC_Berlin
@association

#HelmholtzImaging #OpenScience #reproduciblescience #Reproducibility #dataintegrity #imaging #imagingscience

Image prevalidation helps make science reproducible. At MDC, our Engineering and Support Unit is leading the way. Read how they support open science with tools and training – plus an interview with Ella Bahry 👉 https://bit.ly/why-image-data-integrity-matters

@MDC_Berlin
@association

#HelmholtzImaging #OpenScience #reproduciblescience #Reproducibility #dataintegrity #imaging #imagingscience

@thatdnaguy
"As a field, we’ve incentivized poor proxy metrics instead of research rigor. The increasing number of published papers and retractions makes it crucial to support and incentivize research rigor instead. One part of rigor is maintaining original, unaltered data that underlie key results. Researchers often don’t understand what constitutes original data or how to preserve it for future use. This job may then fall on collaborators with more expertise in informatics."
#bioinformatics #OMICs #FAIR #ReproducibleScience

@thatdnaguy
"As a field, we’ve incentivized poor proxy metrics instead of research rigor. The increasing number of published papers and retractions makes it crucial to support and incentivize research rigor instead. One part of rigor is maintaining original, unaltered data that underlie key results. Researchers often don’t understand what constitutes original data or how to preserve it for future use. This job may then fall on collaborators with more expertise in informatics."
#bioinformatics #OMICs #FAIR #ReproducibleScience

Quarto Manuscript makes me almost want to write scientific articles again. This could potentially change the process quite a lot. But maybe there is also a good use for it in internal project reports. https://quarto.org/docs/manuscripts/ #quarto #reproduciblescience #shareyourcode

Quarto Manuscript makes me almost want to write scientific articles again. This could potentially change the process quite a lot. But maybe there is also a good use for it in internal project reports. https://quarto.org/docs/manuscripts/ #quarto #reproduciblescience #shareyourcode

Don't miss out! Join this workshop on #reproduciblescience on March 25!

Deborah from our Engineering & Support Unit @MDC_Berlin will host a workshop on #image #prevalidation, where she will introduce the importance of ensuring that image data is suitable for the analysis it is intended for.

More information 👇

https://helmholtz.social/@HelmholtzOpenScienceOffice/113837660056092588

Don't miss out! Join this workshop on #reproduciblescience on March 25!

Deborah from our Engineering & Support Unit @MDC_Berlin will host a workshop on #image #prevalidation, where she will introduce the importance of ensuring that image data is suitable for the analysis it is intended for.

More information 👇

https://helmholtz.social/@HelmholtzOpenScienceOffice/113837660056092588

📢 Reminder Meeting for Young Meta Scientists 📢
You can still sign up for the meeting of Young Meta Scientists on 5th December. Deadline for signing up is 18 November!
Find the program here: https://docs.google.com/document/d/1iGJoEAsmUlliYa_vaPnmQ6zA7PH2yJOPiTtwwXhhajE/edit?usp=sharing
Meet other meta scientists, share your research and catch-up on what other groups in the Netherlands are working on.
Sign up cost-free: https://lnkd.in/eK-aezK7

#metascience #reproducibleScience #OpenScience #Networking #ScientificWorkshop

Quarto Manuscript makes me almost want to write scientific articles again. This could potentially change the process quite a lot. But maybe there is also a good use for it in internal project reports. https://quarto.org/docs/manuscripts/ #quarto #reproduciblescience #shareyourcode

Quarto Manuscript makes me almost want to write scientific articles again. This could potentially change the process quite a lot. But maybe there is also a good use for it in internal project reports. https://quarto.org/docs/manuscripts/ #quarto #reproduciblescience #shareyourcode

Quarto Manuscript makes me almost want to write scientific articles again. This could potentially change the process quite a lot. But maybe there is also a good use for it in internal project reports. https://quarto.org/docs/manuscripts/ #quarto #reproduciblescience #shareyourcode

Quarto Manuscript makes me almost want to write scientific articles again. This could potentially change the process quite a lot. But maybe there is also a good use for it in internal project reports. https://quarto.org/docs/manuscripts/ #quarto #reproduciblescience #shareyourcode

Working on the first #LiteratureReview paper of my PhD, it stroke me that besides #GoogleScholar the commonly recommended search interfaces #WebofScience and #Scopus are behind paywalls. What are the alternatives if you want to support #openscience and #reproduciblescience in an interdisciplinary study?

Working on the first #LiteratureReview paper of my PhD, it stroke me that besides #GoogleScholar the commonly recommended search interfaces #WebofScience and #Scopus are behind paywalls. What are the alternatives if you want to support #openscience and #reproduciblescience in an interdisciplinary study?

« Five creative ways to promote reproducible science

The importance of reproducible scientific practices is widely acknowledged. However, limited resources and lack of external incentives have hindered their adoption. Here, we explore ways to promote reproducible science in practice. »

Sorry, I cannot say more because of access options: “Buy this article”!

Who tells to the authors the first way to promote #ReproducibleScience is to make all accessible? In practise!

https://www.nature.com/articles/s41562-023-01808-1

@renku has an awesome new feature! Add *almost* any cloud storage to your project - including, for example, any WebDAV share from the #ethz library or any Next/Owncloud based shared storage like #SWITCHDrive. This makes is it even easier to make your #opendata live on together with code and a live compute environment or simply to align the whole team behind the same data sources.

https://fosstodon.org/@renku/112161033876354620

@open_science #openscience #reproduciblescience #reproducibleresearch #OpenSource

Quarto Manuscript makes me almost want to write scientific articles again. This could potentially change the process quite a lot. But maybe there is also a good use for it in internal project reports. https://quarto.org/docs/manuscripts/ #quarto #reproduciblescience #shareyourcode

Quarto Manuscript makes me almost want to write scientific articles again. This could potentially change the process quite a lot. But maybe there is also a good use for it in internal project reports. https://quarto.org/docs/manuscripts/ #quarto #reproduciblescience #shareyourcode

#Guix #HPC activity report is out! Such a year! Check it out:

https://hpc.guix.info/blog/2024/02/guix-hpc-activity-report-2023/

Many many Bioconductor with guix-bioc channel
100+ packages contributed by AMD for its ROCm and GPUs
Guix Packager a Packaging Assistant
Nesting Containerized Environments
Concise Common Workflow Language
Source Code Availability with #SWH

and more: talks, events, cluster deployment, etc.

Thanks @luis_felipe for the nice artwork :-)

#openscience #reproducibleresearch #reproduciblescience

Quarto Manuscript makes me almost want to write scientific articles again. This could potentially change the process quite a lot. But maybe there is also a good use for it in internal project reports. https://quarto.org/docs/manuscripts/ #quarto #reproduciblescience #shareyourcode

Quarto Manuscript makes me almost want to write scientific articles again. This could potentially change the process quite a lot. But maybe there is also a good use for it in internal project reports. https://quarto.org/docs/manuscripts/ #quarto #reproduciblescience #shareyourcode

This article sets a high bar with guidelines to achieve reproducible science. Most colleagues would not (or could not) meet it. It is unrealistically complicated. Why not just produce well documented, properly formatted, and web-accessible data for every study? Other researchers will use their own methods & code to validate findings using the data. Requirements to publish functioning code creates a barrier to open science.

https://www.nature.com/articles/s41597-022-01143-6#Sec6

#reproduciblescience #openscience #opendata

This article sets a high bar with guidelines to achieve reproducible science. Most colleagues would not (or could not) meet it. It is unrealistically complicated. Why not just produce well documented, properly formatted, and web-accessible data for every study? Other researchers will use their own methods & code to validate findings using the data. Requirements to publish functioning code creates a barrier to open science.

https://www.nature.com/articles/s41597-022-01143-6#Sec6

#reproduciblescience #openscience #opendata

An important innovation in life-science publishing: Sex or gender must be properly addressed in all articles published in @ajpheartcirc! Congrats to the editorial board!
#ReproducibleScience #BetterScience #3R
---
RT @ajpheartcirc
🚨Publication Alert🚨

"Sex Still Matters in Cardiovascular Research"

As of Jan 2023, ALL new research articles submitted to @ajpheartcirc must include details on how #SexAsABiologicalVariable was considered.…
https://twitter.com/ajpheartcirc/status/1601286170738102272

Nice new paper on #ReproducibleScience methods in #Archaeology https://doi.org/10.24072/pci.archaeo.100022

If you missed my crazy talk at #MRITogether about #RegisteredReports, #Preregistration, and holding your pee when doing method-development research, check it out here 👇!

https://youtu.be/P1yFqK3Czfk?t=173

We need to change the culture around methods and start doing #ReproducibleScience!