#pangenomes — Public Fediverse posts

Tan et al. present panCG, an integrative pipeline for family-level super-pangenome analysis across coding and noncoding sequences, enabling the reference-free construction of pangene and pan-conserved noncoding sequences.

🔗 https://doi.org/10.1093/molbev/msag075

#evobio #molbio #pangenomes

Tan et al. present panCG, an integrative pipeline for family-level super-pangenome analysis across coding and noncoding sequences, enabling the reference-free construction of pangene and pan-conserved noncoding sequences.

🔗 https://doi.org/10.1093/molbev/msag075

#evobio #molbio #pangenomes

At last, we're able to share our latest work on #plant #immune system #pangenomes, focusing on #NLR genes in #arabidopsis

"Pangenomic context reveals the extent of intraspecific plant NLR evolution"

1/n

https://biorxiv.org/cgi/content/short/2024.09.02.610789v1

#plantscience #plants #genomics #plant_pathogens #pathogens #coevolution

At last, we're able to share our latest work on #plant #immune system #pangenomes, focusing on #NLR genes in #arabidopsis

"Pangenomic context reveals the extent of intraspecific plant NLR evolution"

1/n

https://biorxiv.org/cgi/content/short/2024.09.02.610789v1

#plantscience #plants #genomics #plant_pathogens #pathogens #coevolution

Registrations are now open for the 2nd edition of the course "Analysis of Prokaryotic Pangenomes" with @jomcinerney & Alan Beavan.

Check it out: https://physalia-courses.org/courses-workshops/prokaritotic-pangenomes/

#Pangenomes #Bioinformatics

Registrations are now open for the 2nd edition of the course "Analysis of Prokaryotic Pangenomes" with @jomcinerney & Alan Beavan.

Check it out: https://physalia-courses.org/courses-workshops/prokaritotic-pangenomes/

#Pangenomes #Bioinformatics

Hey Genomics Mastodon, what’s your favourite tool for making and/or visualising a vertebrate pangenome made from a small number of chromosome-level haplotypes? #genomics #pangenomes #bioinformatics #tools

We wrote a short perspective on the ongoing debate about evolutionary forces shaping microbial pangenomes @GenomeBiolEvol Take home: Be clear what you are talking about and take care to consider all relevant processes
https://academic.oup.com/gbe/advance-article/doi/10.1093/gbe/evad067/7137407
#Evolution #Pangenomes #HGT #NaturalSelection #PopulationGenetics

We wrote a short perspective on the ongoing debate about evolutionary forces shaping microbial pangenomes @GenomeBiolEvol Take home: Be clear what you are talking about and take care to consider all relevant processes
https://academic.oup.com/gbe/advance-article/doi/10.1093/gbe/evad067/7137407
#Evolution #Pangenomes #HGT #NaturalSelection #PopulationGenetics

Just kicked off our course on Prakaryotic #Pangenomes with the legendary Prof James McInerney & the brilliant Dr Alan Beavan. We are ready to delve into the fascinating world of pangenomes and discover their game-changing potential in prokaryotic research.
#evolution #Genomics

Just kicked off our course on Prakaryotic #Pangenomes with the legendary Prof James McInerney & the brilliant Dr Alan Beavan. We are ready to delve into the fascinating world of pangenomes and discover their game-changing potential in prokaryotic research.
#evolution #Genomics

🥁Registration is now open for the course "Analysis of Prokaryotic Pangenomes" with @jomcinerney and Alan Beavan (@mcinerneylab)

🗓️ONLINE, April, 12-14

🔗https://physalia-courses.org/courses-workshops/prokaritotic-pangenomes/

#Genomics #Pangenomics #Bioinformatics #Pangenomes

🥁Registration is now open for the course "Analysis of Prokaryotic Pangenomes" with @jomcinerney and Alan Beavan (@mcinerneylab)

🗓️ONLINE, April, 12-14

🔗https://physalia-courses.org/courses-workshops/prokaritotic-pangenomes/

#Genomics #Pangenomics #Bioinformatics #Pangenomes

#Introduction

I’m a Post-doc at the University of Oxford, working on the evolution of bacterial genomes and pangenomes. I’m interested in bacterial cooperation and ecology, and how these might interact with horizontal gene transfer.

I’m on the train to Manchester for the #MicroEvo22 meeting, where I’ll be presenting a poster (no. 17). Looking forward to seeing lots of you there!

#Bacteria #SocialEvolution #Plasmids #HorizontalGeneTransfer #Pangenomes #ComparativeGenomics

#Introduction

I’m a Post-doc at the University of Oxford, working on the evolution of bacterial genomes and pangenomes. I’m interested in bacterial cooperation and ecology, and how these might interact with horizontal gene transfer.

I’m on the train to Manchester for the #MicroEvo22 meeting, where I’ll be presenting a poster (no. 17). Looking forward to seeing lots of you there!

#Bacteria #SocialEvolution #Plasmids #HorizontalGeneTransfer #Pangenomes #ComparativeGenomics

@dsalas #evolution #pangenomes #phylogenetics #genomics #modelling