#pangenomes — Public Fediverse posts

Tan et al. present panCG, an integrative pipeline for family-level super-pangenome analysis across coding and noncoding sequences, enabling the reference-free construction of pangene and pan-conserved noncoding sequences.

🔗 https://doi.org/10.1093/molbev/msag075

#evobio #molbio #pangenomes

At last, we're able to share our latest work on #plant #immune system #pangenomes, focusing on #NLR genes in #arabidopsis

"Pangenomic context reveals the extent of intraspecific plant NLR evolution"

1/n

https://biorxiv.org/cgi/content/short/2024.09.02.610789v1

#plantscience #plants #genomics #plant_pathogens #pathogens #coevolution

At last, we're able to share our latest work on #plant #immune system #pangenomes, focusing on #NLR genes in #arabidopsis

"Pangenomic context reveals the extent of intraspecific plant NLR evolution"

1/n

https://biorxiv.org/cgi/content/short/2024.09.02.610789v1

#plantscience #plants #genomics #plant_pathogens #pathogens #coevolution

At last, we're able to share our latest work on #plant #immune system #pangenomes, focusing on #NLR genes in #arabidopsis

"Pangenomic context reveals the extent of intraspecific plant NLR evolution"

1/n

https://biorxiv.org/cgi/content/short/2024.09.02.610789v1

#plantscience #plants #genomics #plant_pathogens #pathogens #coevolution

At last, we're able to share our latest work on #plant #immune system #pangenomes, focusing on #NLR genes in #arabidopsis

"Pangenomic context reveals the extent of intraspecific plant NLR evolution"

1/n

https://biorxiv.org/cgi/content/short/2024.09.02.610789v1

#plantscience #plants #genomics #plant_pathogens #pathogens #coevolution

At last, we're able to share our latest work on #plant #immune system #pangenomes, focusing on #NLR genes in #arabidopsis

"Pangenomic context reveals the extent of intraspecific plant NLR evolution"

1/n

https://biorxiv.org/cgi/content/short/2024.09.02.610789v1

#plantscience #plants #genomics #plant_pathogens #pathogens #coevolution

We wrote a short perspective on the ongoing debate about evolutionary forces shaping microbial pangenomes @GenomeBiolEvol Take home: Be clear what you are talking about and take care to consider all relevant processes
https://academic.oup.com/gbe/advance-article/doi/10.1093/gbe/evad067/7137407
#Evolution #Pangenomes #HGT #NaturalSelection #PopulationGenetics

#Introduction

I’m a Post-doc at the University of Oxford, working on the evolution of bacterial genomes and pangenomes. I’m interested in bacterial cooperation and ecology, and how these might interact with horizontal gene transfer.

I’m on the train to Manchester for the #MicroEvo22 meeting, where I’ll be presenting a poster (no. 17). Looking forward to seeing lots of you there!

#Bacteria #SocialEvolution #Plasmids #HorizontalGeneTransfer #Pangenomes #ComparativeGenomics