#oxfordnanopore — Public Fediverse posts
Live and recent posts from across the Fediverse tagged #oxfordnanopore, aggregated by home.social.
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Does anyone know if an NVidia RTX 4060 can handle an Mk1D MinION with runtime basecalling? ONT's documentation says that the minimum requirement is an RTX 5060, but this sounds a bit crazy. And the difference between the two GPUs is not that big I think.
Also, this will mostly be for dRNA-seq, where we basecall after the run, so would it be okay to run two MinIONs in parallel (without basecalling)?
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Does anyone know if an NVidia RTX 4060 can handle an Mk1D MinION with runtime basecalling? ONT's documentation says that the minimum requirement is an RTX 5060, but this sounds a bit crazy. And the difference between the two GPUs is not that big I think.
Also, this will mostly be for dRNA-seq, where we basecall after the run, so would it be okay to run two MinIONs in parallel (without basecalling)?
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Hello everyone! Here is my #introduction.
I'm a #bioinformatics manager at the Canadian Centre for Computational Genomics (C3G), based in #McGill University.
Most recently, I helped coordinate the bioinformatics analysis for the #COVID19 sequencing effort in the province of Quebec. Additionally, I have experience in #transcriptomics, #GenomeAssembly and #OxfordNanopore, among other things.
Excited to give this new platform a try, so far, so good!
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@naturepoker #OxfordNanopore is my favorite website for window-shopping! Do you have an estimate of how much it would cost per plastid? Would be interesting for plant #phylogeography and #conservation