#openms — Public Fediverse posts

Pipeline release! nf-core/mhcquant v3.2.0 - 3.2.0 - Solitude!
Identify and quantify MHC eluted peptides from mass spectrometry raw data
Please see the changelog: https://github.com/nf-core/mhcquant/releases/tag/3.2.0

#dda #immunopeptidomics #massspectrometry #mhc #openms #peptides #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/mhcquant v3.2.0 - 3.2.0 - Solitude!
Identify and quantify MHC eluted peptides from mass spectrometry raw data
Please see the changelog: https://github.com/nf-core/mhcquant/releases/tag/3.2.0

#dda #immunopeptidomics #massspectrometry #mhc #openms #peptides #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/mhcquant v3.2.0 - 3.2.0 - Solitude!
Identify and quantify MHC eluted peptides from mass spectrometry raw data
Please see the changelog: https://github.com/nf-core/mhcquant/releases/tag/3.2.0

#dda #immunopeptidomics #massspectrometry #mhc #openms #peptides #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/mhcquant v3.2.0 - 3.2.0 - Solitude!
Identify and quantify MHC eluted peptides from mass spectrometry raw data
Please see the changelog: https://github.com/nf-core/mhcquant/releases/tag/3.2.0

#dda #immunopeptidomics #massspectrometry #mhc #openms #peptides #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/mhcquant v3.2.0 - 3.2.0 - Solitude!
Identify and quantify MHC eluted peptides from mass spectrometry raw data
Please see the changelog: https://github.com/nf-core/mhcquant/releases/tag/3.2.0

#dda #immunopeptidomics #massspectrometry #mhc #openms #peptides #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/mhcquant v3.1.0 - 3.1.0 - BlüBa!
Identify and quantify MHC eluted peptides from mass spectrometry raw data
Please see the changelog: https://github.com/nf-core/mhcquant/releases/tag/3.1.0

#dda #immunopeptidomics #massspectrometry #mhc #openms #peptides #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/mhcquant v3.1.0 - 3.1.0 - BlüBa!
Identify and quantify MHC eluted peptides from mass spectrometry raw data
Please see the changelog: https://github.com/nf-core/mhcquant/releases/tag/3.1.0

#dda #immunopeptidomics #massspectrometry #mhc #openms #peptides #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/mhcquant v3.1.0 - 3.1.0 - BlüBa!
Identify and quantify MHC eluted peptides from mass spectrometry raw data
Please see the changelog: https://github.com/nf-core/mhcquant/releases/tag/3.1.0

#dda #immunopeptidomics #massspectrometry #mhc #openms #peptides #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/mhcquant v3.1.0 - 3.1.0 - BlüBa!
Identify and quantify MHC eluted peptides from mass spectrometry raw data
Please see the changelog: https://github.com/nf-core/mhcquant/releases/tag/3.1.0

#dda #immunopeptidomics #massspectrometry #mhc #openms #peptides #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/mhcquant v3.1.0 - 3.1.0 - BlüBa!
Identify and quantify MHC eluted peptides from mass spectrometry raw data
Please see the changelog: https://github.com/nf-core/mhcquant/releases/tag/3.1.0

#dda #immunopeptidomics #massspectrometry #mhc #openms #peptides #nfcore #openscience #nextflow #bioinformatics

It's official, I'm attending the EuBIC-MS winter school in January. During the education day my team will will be presenting courses on #proteomics and mass spectrometry using #OpenMS in Python. There's still time to sign up: https://eubic-ms.org/events/2026-winter-school/

#bioinformatics

Pipeline release! nf-core/mhcquant v3.0.0 - MHCquant 3.0.0 - Monrepos!

Please see the changelog: https://github.com/nf-core/mhcquant/releases/tag/3.0.0

#dda #immunopeptidomics #massspectrometry #mhc #openms #peptides #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/mhcquant v3.0.0 - MHCquant 3.0.0 - Monrepos!

Please see the changelog: https://github.com/nf-core/mhcquant/releases/tag/3.0.0

#dda #immunopeptidomics #massspectrometry #mhc #openms #peptides #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/mhcquant v3.0.0 - MHCquant 3.0.0 - Monrepos!

Please see the changelog: https://github.com/nf-core/mhcquant/releases/tag/3.0.0

#dda #immunopeptidomics #massspectrometry #mhc #openms #peptides #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/mhcquant v3.0.0 - MHCquant 3.0.0 - Monrepos!

Please see the changelog: https://github.com/nf-core/mhcquant/releases/tag/3.0.0

#dda #immunopeptidomics #massspectrometry #mhc #openms #peptides #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/mhcquant v3.0.0 - MHCquant 3.0.0 - Monrepos!

Please see the changelog: https://github.com/nf-core/mhcquant/releases/tag/3.0.0

#dda #immunopeptidomics #massspectrometry #mhc #openms #peptides #nfcore #openscience #nextflow #bioinformatics

Proud to announce our latest paper: "OpenMS WebApps: Building User-Friendly Solutions for MS Analysis".

We've been working for the last couple of years to provide an interface for people to try out the power of #OpenMS without having to install or download anything. We think the webapp concept works well for this, and with the templates we provide we also think it should be handy for folks wanting to deploy their own locally hosted apps.

Check out the paper here: https://pubs.acs.org/doi/10.1021/acs.jproteome.4c00872

#OpenScience
#opensource
#TeamMassSpec
#Proteomics
#Metabolomics

More exciting #OpenMS news:
We are proud to announce the release of OpenMS 3.2, now with support for #KNIME 5.3 better export integration with #SIRIUS and improvements to our spectra viewer TOPPView. Read about all the improvements and find a link to download the installers at https://openms.de/news/release3.2/
#OpenScience #TeamMassSpec #opensource

Hi All,
#OpenMS is having our annual user meeting in #Berlin ahead of #HUPO this year October 17-18. For anyone one #TeamMassSpec who is interested in #OpenScience we would love to have you. More information can be found here https://openms.de/news/usermeeting2024/

Postdoctoral Research Fellow in Computational Proteomics @samweingamgee

University of Tuebingen

Join #OpenMS, accelerate your #Proteomics research. We seek a #Postdoc to join our lab in beautiful #Tübingen.

See the full job description on jobRxiv: https://jobrxiv.org/job/university-of-tuebingen-27778-postdoctoral-research-fellow-in-computational-prot...
https://jobrxiv.org/job/university-of-tuebingen-27778-postdoctoral-research-fellow-in-computational-proteomics/?feed_id=76880

Postdoctoral Research Fellow in Computational Metabolomics @samweingamgee

University of Tuebingen

Join #OpenMS, accelerate your #Metabolomics research. We seek a #Postdoc to join our lab in beautiful #Tübingen.

See the full job description on jobRxiv: https://jobrxiv.org/job/university-of-tuebingen-27778-postdoctoral-research-fellow-in-computationa...
https://jobrxiv.org/job/university-of-tuebingen-27778-postdoctoral-research-fellow-in-computational-metabolomics/?feed_id=76859

C++ Research Software Engineer with DevOps Expertise @samweingamgee

University of Tuebingen

Come live in a German medieval university town! We seek a software engineer to help build our #FOSS project #OpenMS. 6 weeks vacation, full benefits.

See the full job description on jobRxiv: https://jobrxiv.org/job/university-of-tuebingen-27778-c-research-software-e...
https://jobrxiv.org/job/university-of-tuebingen-27778-c-research-software-engineer-with-devops-expertise/?feed_id=76852

Pipeline release! nf-core/mhcquant v2.6.0 - MHCquant 2.6.0 - Mr Bob!

Please see the changelog: https://github.com/nf-core/mhcquant/releases/tag/2.6.0

#dda #immunopeptidomics #mass-spectrometry #mhc #openms #peptides #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/mhcquant v2.6.0 - MHCquant 2.6.0 - Mr Bob!

Please see the changelog: https://github.com/nf-core/mhcquant/releases/tag/2.6.0

#dda #immunopeptidomics #mass-spectrometry #mhc #openms #peptides #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/mhcquant v2.6.0 - MHCquant 2.6.0 - Mr Bob!

Please see the changelog: https://github.com/nf-core/mhcquant/releases/tag/2.6.0

#dda #immunopeptidomics #mass-spectrometry #mhc #openms #peptides #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/mhcquant v2.6.0 - MHCquant 2.6.0 - Mr Bob!

Please see the changelog: https://github.com/nf-core/mhcquant/releases/tag/2.6.0

#dda #immunopeptidomics #mass-spectrometry #mhc #openms #peptides #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/mhcquant v2.6.0 - MHCquant 2.6.0 - Mr Bob!

Please see the changelog: https://github.com/nf-core/mhcquant/releases/tag/2.6.0

#dda #immunopeptidomics #mass-spectrometry #mhc #openms #peptides #nfcore #openscience #nextflow #bioinformatics

Excited to announce the #Publication of our #OpenMS 3.0 paper. Checkout powerful tools and libraries in OpenMS available in C++ or python!! Check out more in:

https://www.nature.com/articles/s41592-024-02197-7

Postdoctoral Research Fellow in Computational Proteomics @samweingamgee

University of Tuebingen

Join #OpenMS, accelerate your #Proteomics research. We seek a #Postdoc to join our lab in beautiful #Tübingen.

See the full job description on jobRxiv: https://jobrxiv.org/job/university-of-tuebingen-27778-postdoctoral-research-fellow-in-computational-prot...
https://jobrxiv.org/job/university-of-tuebingen-27778-postdoctoral-research-fellow-in-computational-proteomics/?feed_id=71595

Postdoctoral Research Fellow in Computational Metabolomics @samweingamgee

University of Tuebingen

Join #OpenMS, accelerate your #Metabolomics research. We seek a #Postdoc to join our lab in beautiful #Tübingen.

See the full job description on jobRxiv: https://jobrxiv.org/job/university-of-tuebingen-27778-postdoctoral-research-fellow-in-computationa...
https://jobrxiv.org/job/university-of-tuebingen-27778-postdoctoral-research-fellow-in-computational-metabolomics/?feed_id=71427

C++ Research Software Engineer with DevOps Expertise @samweingamgee

University of Tuebingen

Come live in a German medieval university town! We seek a software engineer to help build our #FOSS project #OpenMS. 6 weeks vacation, full benefits.

See the full job description on jobRxiv: https://jobrxiv.org/job/university-of-tuebingen-27778-c-research-software-e...
https://jobrxiv.org/job/university-of-tuebingen-27778-c-research-software-engineer-with-devops-expertise/?feed_id=71385

Postdoctoral Research Fellow in Computational Proteomics @samweingamgee

University of Tuebingen

Join #OpenMS, accelerate your #Proteomics research. We seek a #Postdoc to join our lab in beautiful #Tübingen.

See the full job description on jobRxiv: https://jobrxiv.org/job/university-of-tuebingen-27778-postdoctoral-research-fellow-in-computational-prot...
https://jobrxiv.org/job/university-of-tuebingen-27778-postdoctoral-research-fellow-in-computational-proteomics/?feed_id=70319

Postdoctoral Research Fellow in Computational Proteomics @samweingamgee

University of Tuebingen

Join #OpenMS, accelerate your #Proteomics research. We seek a #Postdoc to join our lab in beautiful #Tübingen.

See the full job description on jobRxiv: https://jobrxiv.org/job/university-of-tuebingen-27778-postdoctoral-research-fellow-in-computational-prot...
https://jobrxiv.org/job/university-of-tuebingen-27778-postdoctoral-research-fellow-in-computational-proteomics/?feed_id=70239

Howdy folks. I'm excited to announce that we are hiring #RSE 's and #C++ developers to work on #OpenMS. Excellent #worklifebalance in the beautiful German mediaeval university town of #Tübingen, join one of the world leading #ComputationalMS teams. (Six weeks vacation, full benefits and medical, as the Americans among us say) and a potential opportunity to publish research and pursue a #PhD as well. We are looking for C++ developers with #DevOps experience. Check out: https://jobrxiv.org/job/university-of-tuebingen-27778-c-research-software-engineer-with-devops-expertise/

Postdoctoral Research Fellow in Computational Metabolomics @samweingamgee

University of Tuebingen

Join #OpenMS, accelerate your #Metabolomics research. We seek a #Postdoc to join our lab in beautiful #Tübingen.

See the full job description on jobRxiv: https://jobrxiv.org/job/university-of-tuebingen-27778-postdoctoral-research-fellow-in-computationa...
https://jobrxiv.org/job/university-of-tuebingen-27778-postdoctoral-research-fellow-in-computational-metabolomics/?feed_id=70094

C++ Research Software Engineer with DevOps Expertise @samweingamgee

University of Tuebingen

Come live in a German medieval university town! We seek a software engineer to help build our #FOSS project #OpenMS. 6 weeks vacation, full benefits.

See the full job description on jobRxiv: https://jobrxiv.org/job/university-of-tuebingen-27778-c-research-software-e...
https://jobrxiv.org/job/university-of-tuebingen-27778-c-research-software-engineer-with-devops-expertise/?feed_id=70069

Postdoctoral Research Fellow in Computational Metabolomics @samweingamgee

University of Tuebingen

Join #OpenMS, accelerate your #Metabolomics research. We seek a #Postdoc to join our lab in beautiful #Tübingen.

See the full job description on jobRxiv: https://jobrxiv.org/job/university-of-tuebingen-27778-postdoctoral-research-fellow-in-computationa...
https://jobrxiv.org/job/university-of-tuebingen-27778-postdoctoral-research-fellow-in-computational-metabolomics/?feed_id=70046

C++ Research Software Engineer with DevOps Expertise @samweingamgee

University of Tuebingen

Come live in a German medieval university town! We seek a software engineer to help build our #FOSS project #OpenMS. 6 weeks vacation, full benefits.

See the full job description on jobRxiv: https://jobrxiv.org/job/university-of-tuebingen-27778-c-research-software-e...
https://jobrxiv.org/job/university-of-tuebingen-27778-c-research-software-engineer-with-devops-expertise/?feed_id=70030

@neely @pwilmart @RonBeavis

Here's a review of what being a Delaware public benefit corp implies: https://www.natlawreview.com/article/delaware-public-benefit-corporations

Since we just went through looking into this for #OpenMS in Pennsylvania I can say that a public benefit corp is better than nothing, but it doesn't really provide a good mechanism for compelling the corp to act with the public benefit that it claims.

Edited to change to better review link.

Happy to announce that we've just put up our preprint for the #OpenMS 3.0 release:

https://www.researchsquare.com/article/rs-3286368/v1

OpenMS is the by far the largest software project that I've ever worked on, and this is the first major release during my tenure here. Happy to answer any questions.

#TeamMassSpec #FOSS #OpenScience #OpenSource #Proteomics #massSpectrometry

#TeamMassSpec #Proteomics #MassSpectrometry: Have you used or hear of #OpenMS? Would you be interested in filling out a survey to guide our future development? Please go to: https://www.surveymonkey.de/r/9F6TMJL
You will get my gratitude, and, for a limited time, if you toot me that you filled it out a free random fact of my choosing. Come help support #OpenScience #FOSS #OpenSource

@nixCraft
Lol. I had a contractor for a major pharma company try to pull this with #OpenMS. After finding out that he had been brought in to replace the team of employees who actually understood our software I responded in the same vein as Max. So far just hearing crickets from them.

My wife has recently been reading a bunch of scientific literature for a new job. She's noticed that we are really bad about creating #backronyms. Would there be any interest in a hashtag or an account to collect the ones that we all come across*? #Science #TeamMassSpec #scientists

Her inaugural one is:
"SARGON ( SmArt eneRGy dOmain oNtology )"*

* to be clear I don't mean in a malicious manner. I work on " TOPP (The Openms PiPeline) for goodness sakes #OpenMS

A lovely view from #PrviVrh #Croatia, on the #OpenMS retreat. #itookthisphoto

A lovely view from #PrviVrh #Croatia, on the #OpenMS retreat. #itookthisphoto

A lovely view from #PrviVrh #Croatia, on the #OpenMS retreat. #itookthisphoto

A lovely view from #PrviVrh #Croatia, on the #OpenMS retreat. #itookthisphoto

A lovely view from #PrviVrh #Croatia, on the #OpenMS retreat. #itookthisphoto