#ometiff — Public Fediverse posts

Pipeline release! nf-core/mcmicro v2.0.0 - 2.0.0!
An end-to-end processing pipeline that transforms multi-channel whole-slide images into single-cell data.
Please see the changelog: https://github.com/nf-core/mcmicro/releases/tag/2.0.0

#bioformats #imageanalysis #imageprocessing #microscopy #multiplexedimaging #ometiff #registration #segmentation #singlecell #spatial #stitching #tma #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/mcmicro v2.0.0 - 2.0.0!
An end-to-end processing pipeline that transforms multi-channel whole-slide images into single-cell data.
Please see the changelog: https://github.com/nf-core/mcmicro/releases/tag/2.0.0

#bioformats #imageanalysis #imageprocessing #microscopy #multiplexedimaging #ometiff #registration #segmentation #singlecell #spatial #stitching #tma #nfcore #openscience #nextflow #bioinformatics

#OMIO currently supports: #TIFF, #OMETIFF, #TIFFseries, #ZEISS #LSM and #CZI, #Thorlabs RAW. All inputs are mapped to a unified representation with #OME-compatible axis semantics and standardized metadata handling.

🧵2/8

It's #FluorescenceFriday and I would share a lovely picture, but not everyone knows you can compress #OMETIFF files, so I'm still waiting for the download. 161 GB!

#Multiplex #ImageAnalysis #FileFormats

RT: @[email protected]

#microscopists, want to get a better overview of microscopy image #FileFormats, bit depth, scaling, image #metadata, dimensions, and more?

Join our webinar Feb 23 and explore what formats e.g. #OMETIFF:

https://svi.nl/WebinarInvitation

#microscopy #ImageAnalysis #confocal