#jgi — Public Fediverse posts

Moin!
In der ersten Vorlesungswoche im Sommersemester veranstalten wir zusammen mit dem @gfsrsteinfurt wieder eine LAN-Party am Technologie-Campus Steinfurt der FH Münster. Sie findet am Wochenende vom 27.03. bis zum 29.03. statt. Wir laden euch herzlich dazu ein! :bc_gamer:
Weitere Infos und Anmeldung: https://fh.ms/lan-party

#WirSindInformatik #JGI

It’s amazing to see how new tech is pushing science forward. The @jgi.doe.gov’s GenomeOcean model is using AI to not only analyze but also generate microbial DNA sequences - decoding nature's language. #GenomeOcean #JGI #DNA #AI #LLM

GenomeOcean Leverages AI to De...

Safety in Bytes geht in Runde 2! 🚀

Auch dieses Jahr findet unser Workshop beim Informatik-Festival der @informatik statt! Wir bringen Expert:innen und Interessierte aus Wirtschaft, Wissenschaft und Politik zusammen – mit einem gemeinsamen Ziel: IT-Sicherheit verständlich und diskutierbar zu machen.

Du hast eine Idee für einen Beitrag, Workshop oder Impuls? Dann freuen wir uns über deine Einreichung!
Weitere Infos findest du hier: https://2025.safetyinbytes.de/

#WirSindInformatik #JGI #INFORMATIK25

Morgen steht der nächste STEM GIrls Workshop an: Abschlussarbeit, Promotion - Die Promotion ist für manche ein spannender nächster Schritt – aber was bedeutet das konkret? Wie schreibt man eine Doktorarbeit? Wie sieht der Alltag in der Promotion aus?
Diese und weitere Fragen beantworten euch Denise Schmitz und Clarissa Sabrina Arlinghaus im nächsten STEM GIrls Workshop. 🎓

Weitere Informationen und Anmeldung findet ihr hier: https://junge.gi.de/veranstaltung/how-to-abschlussarbeit-und-promotion

@informatik #WirsindInformatik #JGI

Save the Date: JGI Treffen am 26.04. 📆

Am 26. April ab 15 Uhr ist es wieder so weit – das nächste Treffen der JGI steht an, und wir haben spannende Themen im Gepäck!

🎙️ Podcast-Update
🔁 Zukunft der JGI-Leitung
:discord: Discord Lernchannel
:comfy: Merch
📍 Planung der nächsten Präsenzsitzung

Alle JGI-Mitglieder und Interessierte sind herzlich eingeladen – bringt euch ein, wir freuen uns auf euch!

Zur Anmeldung geht es hier entlang: https://terminplaner6.dfn.de/p/b812fc5b8c2b9a571e9871d078ae9c18-1154542

#JGI #WirsindInformatik

Die STEM GIrls Workshops sind zurück! 👏🏻

Die Reihe startete kürzlich mit einem Vortrag von Deborah Fleischhut. Die kommenden Termine findet ihr in der Übersicht. Es gibt wieder ein breites Spektrum an vortragenden Persönlichkeiten.

Die STEM GIrls bieten eine kostenlose Online-Eventreihe für weibliche und nicht-binäre Personen, um ihr eigenes Skillset zu erweitern und sich in einem geschützten Rahmen auszutauschen und zu vernetzen.

https://junge.gi.de/veranstaltungen

#WirsindInformatik #JGI #STEMGIrls

Huch, ist das hier nicht das Fediverse? 👀

Wir sind die Junge Gesellschaft für Informatik, die Jugendgruppe der @informatik und nun endlich auch bei Mastodon! Als bundesweites Netzwerk von Hochschulgruppen lernen wir voneinander und gestalten zusammen lokale wie auch deutschlandweite Events. Von spannenden Workshops bis hin zu großen Vernetzungstreffen - bei uns ist immer was los!

Du möchtest die Zukunft der Informatik mitgestalten? Besuche uns auf junge.gi.de und werde Teil der #JGI :)

Getting to the root of a #plant's success.

#microbiome #soil #rhizosphere #genomics #JGI #switchgrass #productivity

https://phys.org/news/2024-08-root-success.html

A new episode in our series on the evolution of mushrooms & #JGI #1KFG project has been released today in
@CellGenomics
... Unearthing bonnet mushroom evolution.
A huge collaboration worldwide

Thanks to the #JGI #1KFG project, 59 new genomes have been generated for the fungal order Sordariales. Variation of genomic properties stems from within-family evolution …
A collaboration with @H_S_Johannesson and many others

https://www.sciencedirect.com/science/article/pii/S1055790323002385

The number of known protein families doubled today!

>1 Billion novel proteins from metagenomes, representing >100k previously unknown protein families

Awesome work by Georgios Pavlopoulos, Nikos Kyrpides, many #JGI colleagues and #JGI users across the globe.

Original paper: https://www.nature.com/articles/s41586-023-06583-7

Overview: https://jgi.doe.gov/release-nmpfcatalog/

#genomics #metagenomes #protein @LBNLBioSci @apcamargo

General reminder:

Algae are Amazing!

(Vanessa Brisson at #JGI2023)

@LBNLBioSci

#algae #jgi

Day 3 of #JGI2023:

#Metabolites, #Viruses, #MobileGeneticElements, #Plants and more!

https://usermeeting.jgi.doe.gov/agenda/

@LBNLBioSci #JGI #Genomics

Day 3 of #JGI2023:

#Metabolites, #Viruses, #MobileGeneticElements, #Plants and more!

https://usermeeting.jgi.doe.gov/agenda/

@LBNLBioSci #JGI #Genomics

Day 3 of #JGI2023:

#Metabolites, #Viruses, #MobileGeneticElements, #Plants and more!

https://usermeeting.jgi.doe.gov/agenda/

@LBNLBioSci #JGI #Genomics

Day 3 of #JGI2023:

#Metabolites, #Viruses, #MobileGeneticElements, #Plants and more!

https://usermeeting.jgi.doe.gov/agenda/

@LBNLBioSci #JGI #Genomics

Day 3 of #JGI2023:

#Metabolites, #Viruses, #MobileGeneticElements, #Plants and more!

https://usermeeting.jgi.doe.gov/agenda/

@LBNLBioSci #JGI #Genomics

Katherine Duncan from Strathclyde University:

Linking genes and metabolites for informed antibiotic discovery

#jgi2023 #actinomycetes #streptomyces #antibiotics #jgi

@LBNLBioSci

Katherine Duncan from Strathclyde University:

Linking genes and metabolites for informed antibiotic discovery

#jgi2023 #actinomycetes #streptomyces #antibiotics #jgi

@LBNLBioSci

Katherine Duncan from Strathclyde University:

Linking genes and metabolites for informed antibiotic discovery

#jgi2023 #actinomycetes #streptomyces #antibiotics #jgi

@LBNLBioSci

Katherine Duncan from Strathclyde University:

Linking genes and metabolites for informed antibiotic discovery

#jgi2023 #actinomycetes #streptomyces #antibiotics #jgi

@LBNLBioSci

Katherine Duncan from Strathclyde University:

Linking genes and metabolites for informed antibiotic discovery

#jgi2023 #actinomycetes #streptomyces #antibiotics #jgi

@LBNLBioSci

Next at #JGI2023:

Lhais Caldas from Federal University of Sao Paulo talking about the amazing chemodiversity of basidiomycetes

#fungi #metabolites #pathways #genomics #jgi
@LBNLBioSci

Next up at #JGI2023:

Cathy Wu from U. of Delaware

Integrative Text Mining and Graph Learning for Biological Discovery

#JGI #Bioinformatics #KnowledgeGraphs #ai #ml
@LBNLBioSci

Deciphering the Chemical Language of Microbiomes

Marnix Medema at #JGI2023

#JGI #microbiome #microbiology #genomics @LBNLBioSci

Space-Omics!

@NASA's Kasthuri "Venkat" Venkateswaran now talking about
"Microbes in Space"

#JGI2023 #JGI #microbiology #spacemicrobes
@LBNLBioSci

Time-resolved analysis of microbial mats - using metatranscriptomics!

Amanda Shelton from Carnegie at #JGI2023

#jgi @LBNLBioSci #microbiology #metagenomics #metatranscriptomics

An intriguing concept:

Targeted reverse genomics

#JGI2023 #JGI #microbiology #genomics @LBNLBioSci

It's a wild morning at #JGI2023:

Mircea Podar from ORNL talking about
"The Wild Side of Microbiology"

#JGI #microbiology #genomics @LBNLBioSci

Quantitative Stable Isotope Probing (qSIP-omics) explained with candy

https://youtu.be/fg7VEBIcA_I?t=286

#JGI2023 #JGI #omics @LBNLBioSci

Wild Microbial Ecology!

First Keynote by Bruce Hungate at #JGI2023

#JGI #genomics #microbiology @LBNLBioSci

Starting today!

JGI's annual "Genomics of Energy & Environment Meeting"

https://usermeeting.jgi.doe.gov/

#JGI2023 #JGI @LBNLBioSci #genomics

Hmm. One of microbial genomes we'll absolutely need for some comparison work is registered on NCBI biosample&bioprojects, but only available on JGI. I'm guessing we'll need a special permission to use it in our study? #microbiology #genomics #JGI

Registration is now open for the

2023 Annual Genomics of Energy & Environment Meeting

at the Joint Genome Institute (JGI)
August 21-25, 2023 in Berkeley, CA

https://usermeeting.jgi.doe.gov/

#jgi #genomics #energy #environment @LBNLBioSci @berkeleylab

Using team science to build communities around data:

This article from our "JGI at 25" anniversary series shows how global communities of researchers have formed around large-scale user projects supported by the Joint Genome Institute.

https://jgi.doe.gov/jgi-at-25-using-team-science-to-build-communities-around-data/

@jgi @LBNLBioSci @berkeleylab @MycoCosm #JGI #DOEUserFacilities #OpenGreenGenomes #1000FungalGenomes #plant #fungal #genome

Tomorrow at Plant & Animal Genome Conference #PAG30 in San Diego:

Plant Genomic Science workshop co-organized by #JGI and #KBase

https://bit.ly/3PgqzPE

@jgi @LBNLBioSci @berkeleylab #plant #genomes #bioenergy #BerkeleyLab

The Department of Energy just announced a new $56M initiative to support training and research opportunities for students and staff at HBCUs and other MSIs in collaboration with DOE-funded National Labs and facilities (such as @berkeleylab or @jgi)

If you are at an HBCU, HSI, AANAPISI, or other minority-serving institution, consider attending one of the upcoming webinars to find out more.

https://www.energy.gov/science/articles/department-energy-announces-56-million-traineeships-supporting-historically

#NationalLab #BerkeleyLab #JGI #MSI #HBCU #HSI #AANAPISI #STEM @LBNLBioSci

Are you attending the Plant & Animal Genome Conference #PAG30 in San Diego (January 2023)?

If so, mark your calendar for the Plant Genomic Science workshop co-organized by #JGI and #KBase

https://bit.ly/3PgqzPE

@jgi @LBNLBioSci @berkeleylab #plant #genomes #bioenergy

My favorite science story from JGI in 2022: A centimeter-long bacterium!

https://newscenter.lbl.gov/2022/06/23/giant-bacteria-found-in-guadeloupe-mangroves-challenge-traditional-concepts/

@jgi @LBNLBioSci #JGI #BerkeleyLab #Thiomargarita #Bacteria

Since its launch 25 years ago, @jgi's Genomes OnLine Database has matured from six projects on a spreadsheet into a flagship genomic metadata repository.

https://jgi.doe.gov/silver-age-of-gold-introduces-new-features/

@LBNLBioSci #metagenomics #microbiome #microbial #genomes #GOLD #GenomesOnlineDatabase #JGI #BerkeleyLab

Great to see that the Biosciences Area of Berkeley Lab (in which our lab and JGI are located) is now also represented here

https://sciencemastodon.com/@LBNLBioSci/followers

@LBNLBioSci

#Berkeley #BerkeleyLab #LBNL #NationalLab #energy #environment #genomics #JGI

IMG/M https://img.jgi.doe.gov now featuring:
- 100k microbial genomes
- 46k metagenomes
- 69 billion genes
- 23 trillion bp of microbial/metagenomes
- advanced scaffold search
- ANI for metagenome bins
- ...

Full list of upgrades in the new NAR paper:
https://academic.oup.com/nar/advance-article/doi/10.1093/nar/gkac976/6830671

#JGI #BerkeleyLab #DOE #Microbial #Genomics #Metagenomics #Microbiome #IMG

They are huge (for a virus) and there are probably MANY more of them out there.

Great new review about GIANT :dna: viruses :dna: by Frederik Schulz, Chantal Abergel, Tanja Woyke

https://www.nature.com/articles/s41579-022-00754-5

#JGI #BerkeleyLab #virus #giantvirus #NCLDV #NatureReviewsMicrobiology