#demultiplexing — Public Fediverse posts

We've just released major update of #SeqTagger

Notable changes in v2.1a:
- signal standarisation
- rolling-window classification
- new models: b07_RNA004_tRNA & b13_RNA004_mRNA
- backward-compatible with v1 models
- as before, very high speed, precision & recovery!

For the first time, SeqTagger supports #tRNA #demultiplexing natively thanks to new rolling-window classification (b07_RNA004_tRNA).

Try it yourself https://github.com/novoalab/SeqTagger

@nanopore #DRS #direct #RNA

Pipeline release! nf-core/demultiplex v1.7.1 - 1.7.1!
Demultiplexing pipeline for sequencing data
Please see the changelog: https://github.com/nf-core/demultiplex/releases/tag/1.7.1

#bases2fastq #bcl2fastq #demultiplexing #elementbiosciences #illumina #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/demultiplex v1.7.0 - 1.7.0!

Demultiplexing pipeline for sequencing data

Please see the changelog: https://github.com/nf-core/demultiplex/releases/tag/1.7.0

#bases2fastq #bcl2fastq #demultiplexing #elementbiosciences #illumina #nfcore #openscience #nextflow #bioinformatics

SeqTagger v1.0d is officially released :)
It feels great to break the news on Mastodon first!
@nanopore #direct #RNA #demultiplexing
https://github.com/novoalab/SeqTagger/?tab=readme-ov-file#benchmarking-of-b96_rna004

Pipeline release! nf-core/demultiplex v1.6.1 - 1.6.1!

Please see the changelog: https://github.com/nf-core/demultiplex/releases/tag/1.6.1

#bases2fastq #bcl2fastq #demultiplexing #elementbiosciences #illumina #nfcore #openscience #nextflow #bioinformatics

shamelessly sharing our recent work: Rapid and accurate #demultiplexing of
direct #RNA #nanopore sequencing datasets with SeqTagger
#paper
https://genome.cshlp.org/content/early/2025/01/29/gr.279290.124.full.pdf

Pipeline release! nf-core/demultiplex v1.6.0 - 1.6.0!

Please see the changelog: https://github.com/nf-core/demultiplex/releases/tag/1.6.0

#bases2fastq #bcl2fastq #demultiplexing #elementbiosciences #illumina #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/demultiplex v1.5.4 - 1.5.4 - 2024-12-10!

Please see the changelog: https://github.com/nf-core/demultiplex/releases/tag/1.5.4

#bases2fastq #bcl2fastq #demultiplexing #elementbiosciences #illumina #nfcore #openscience #nextflow #bioinformatics

VERY excited to share SeqTagger with the world! https://github.com/novoalab/SeqTagger/

If you want to learn more about our super-fast and accurate #demultiplexing tool for #direct #RNA #sequencing (DRS), check out the thread below. #nanopore
https://www.biorxiv.org/content/10.1101/2024.10.29.620808v1

We started developing SeqTagger which follows a very straightforward logic: Let’s demultiplex by basecalling the #DNA #barcode sequence (on an RNA pore) and aligning it to a set of reference barcode sequences.

Pipeline release! nf-core/demultiplex v1.5.3 - 1.5.3 - 2024-11-06!

Please see the changelog: https://github.com/nf-core/demultiplex/releases/tag/1.5.3

#bases2fastq #bcl2fastq #demultiplexing #elementbiosciences #illumina #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/demultiplex v1.5.2 - 1.5.2!

Please see the changelog: https://github.com/nf-core/demultiplex/releases/tag/1.5.2

#bases2fastq #bcl2fastq #demultiplexing #elementbiosciences #illumina #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/demultiplex v1.5.1 - 1.5.1 - Ripped Titanium Snake Patch!

Please see the changelog: https://github.com/nf-core/demultiplex/releases/tag/1.5.1

#bases2fastq #bcl2fastq #demultiplexing #elementbiosciences #illumina #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/demultiplex v1.5.0 - 1.5.0 - Ripped Titanium Snake!

Please see the changelog: https://github.com/nf-core/demultiplex/releases/tag/1.5.0

#bases2fastq #bcl2fastq #demultiplexing #elementbiosciences #illumina #nfcore #openscience #nextflow #bioinformatics