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#computational-biology — Public Fediverse posts

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  1. 🦠 Can we stop mistaking bacterial weapons for bacteriophages?

    🔗 TattleTail: A Rule-Based Tool for Identifying Canonical Pyocin-Encoding Gene Clusters in Pseudomonas aeruginosa. Computational and Structural Biotechnology Journal (CSBJ). DOI: doi.org/10.34133/csbj.0230

    📚 CSBJ - A Science Partner Journal: spj.science.org/journal/csbj

    #Microbiology #AntimicrobialResistance #Genomics #Pseudomonas #Pyocins #Bacteriophages #Bacteriocins #ComputationalBiology #AMR #Bioinformatics

  2. 🦠 Can we stop mistaking bacterial weapons for bacteriophages?

    🔗 TattleTail: A Rule-Based Tool for Identifying Canonical Pyocin-Encoding Gene Clusters in Pseudomonas aeruginosa. Computational and Structural Biotechnology Journal (CSBJ). DOI: doi.org/10.34133/csbj.0230

    📚 CSBJ - A Science Partner Journal: spj.science.org/journal/csbj

    #Microbiology #AntimicrobialResistance #Genomics #Pseudomonas #Pyocins #Bacteriophages #Bacteriocins #ComputationalBiology #AMR #Bioinformatics

  3. 🦠 Can we stop mistaking bacterial weapons for bacteriophages?

    🔗 TattleTail: A Rule-Based Tool for Identifying Canonical Pyocin-Encoding Gene Clusters in Pseudomonas aeruginosa. Computational and Structural Biotechnology Journal (CSBJ). DOI: doi.org/10.34133/csbj.0230

    📚 CSBJ - A Science Partner Journal: spj.science.org/journal/csbj

    #Microbiology #AntimicrobialResistance #Genomics #Pseudomonas #Pyocins #Bacteriophages #Bacteriocins #ComputationalBiology #AMR #Bioinformatics

  4. 🦠 Can we stop mistaking bacterial weapons for bacteriophages?

    🔗 TattleTail: A Rule-Based Tool for Identifying Canonical Pyocin-Encoding Gene Clusters in Pseudomonas aeruginosa. Computational and Structural Biotechnology Journal (CSBJ). DOI: doi.org/10.34133/csbj.0230

    📚 CSBJ - A Science Partner Journal: spj.science.org/journal/csbj

    #Microbiology #AntimicrobialResistance #Genomics #Pseudomonas #Pyocins #Bacteriophages #Bacteriocins #ComputationalBiology #AMR #Bioinformatics

  5. A closed-loop artificial intelligence laboratory system capable of autonomously generating scientific hypotheses, designing and executing experiments, and analyzing the resulting biological data.
    #SystemsBiology #ArtificialIntelligence #ComputationalBiology #Biotechnology #sflorg
    sflorg.com/2026/09/bio09302601

  6. A closed-loop artificial intelligence laboratory system capable of autonomously generating scientific hypotheses, designing and executing experiments, and analyzing the resulting biological data.
    #SystemsBiology #ArtificialIntelligence #ComputationalBiology #Biotechnology #sflorg
    sflorg.com/2026/09/bio09302601

  7. A closed-loop artificial intelligence laboratory system capable of autonomously generating scientific hypotheses, designing and executing experiments, and analyzing the resulting biological data.
    #SystemsBiology #ArtificialIntelligence #ComputationalBiology #Biotechnology #sflorg
    sflorg.com/2026/09/bio09302601

  8. A closed-loop artificial intelligence laboratory system capable of autonomously generating scientific hypotheses, designing and executing experiments, and analyzing the resulting biological data.
    #SystemsBiology #ArtificialIntelligence #ComputationalBiology #Biotechnology #sflorg
    sflorg.com/2026/09/bio09302601

  9. 🤖 Are protein language models overhyped without evolutionary context?

    🔗 Evolutionary Constraints Improve Protein Large Language Model Predictions for Protein Stability, Binding Regions, and Epistasis. Computational and Structural Biotechnology Journal (CSBJ). DOI: doi.org/10.34133/csbj.0226

    📚 CSBJ - A Science Partner Journal: spj.science.org/journal/csbj

    #ProteinAI #ProteinScience #ProteinLanguageModels #Bioinformatics #ComputationalBiology #ArtificialIntelligence #EvolutionaryBiology

  10. 🤖 Are protein language models overhyped without evolutionary context?

    🔗 Evolutionary Constraints Improve Protein Large Language Model Predictions for Protein Stability, Binding Regions, and Epistasis. Computational and Structural Biotechnology Journal (CSBJ). DOI: doi.org/10.34133/csbj.0226

    📚 CSBJ - A Science Partner Journal: spj.science.org/journal/csbj

    #ProteinAI #ProteinScience #ProteinLanguageModels #Bioinformatics #ComputationalBiology #ArtificialIntelligence #EvolutionaryBiology

  11. 🤖 Are protein language models overhyped without evolutionary context?

    🔗 Evolutionary Constraints Improve Protein Large Language Model Predictions for Protein Stability, Binding Regions, and Epistasis. Computational and Structural Biotechnology Journal (CSBJ). DOI: doi.org/10.34133/csbj.0226

    📚 CSBJ - A Science Partner Journal: spj.science.org/journal/csbj

    #ProteinAI #ProteinScience #ProteinLanguageModels #Bioinformatics #ComputationalBiology #ArtificialIntelligence #EvolutionaryBiology

  12. 🤖 Are protein language models overhyped without evolutionary context?

    🔗 Evolutionary Constraints Improve Protein Large Language Model Predictions for Protein Stability, Binding Regions, and Epistasis. Computational and Structural Biotechnology Journal (CSBJ). DOI: doi.org/10.34133/csbj.0226

    📚 CSBJ - A Science Partner Journal: spj.science.org/journal/csbj

    #ProteinAI #ProteinScience #ProteinLanguageModels #Bioinformatics #ComputationalBiology #ArtificialIntelligence #EvolutionaryBiology

  13. A mechanism where populations of neurons compensate for individual unreliability by collectively representing the same information, challenging previous theories that shared noise limits information capacity.
    #Neuroscience #ComputationalBiology #InformationTheory #sflorg
    sflorg.com/2026/09/ns09282601.

  14. A mechanism where populations of neurons compensate for individual unreliability by collectively representing the same information, challenging previous theories that shared noise limits information capacity.
    #Neuroscience #ComputationalBiology #InformationTheory #sflorg
    sflorg.com/2026/09/ns09282601.

  15. A mechanism where populations of neurons compensate for individual unreliability by collectively representing the same information, challenging previous theories that shared noise limits information capacity.
    #Neuroscience #ComputationalBiology #InformationTheory #sflorg
    sflorg.com/2026/09/ns09282601.

  16. A mechanism where populations of neurons compensate for individual unreliability by collectively representing the same information, challenging previous theories that shared noise limits information capacity.
    #Neuroscience #ComputationalBiology #InformationTheory #sflorg
    sflorg.com/2026/09/ns09282601.

  17. 🧬 Are we still designing siRNAs the old-fashioned way while AI already sees what we’re missing?

    🔗 Leveraging Foundation Models for the Characterization of Small-RNA Properties. Computational and Structural Biotechnology Journal (CSBJ). DOI: doi.org/10.34133/csbj.0224

    📚 CSBJ - A Science Partner Journal: spj.science.org/journal/csbj

    #RNA #siRNA #RNAtherapeutics #Bioinformatics #ComputationalBiology #DrugDiscovery #MachineLearning #PrecisionMedicine #Genomics #ArtificialIntelligence #FoundationModels

  18. 🧬 Are we still designing siRNAs the old-fashioned way while AI already sees what we’re missing?

    🔗 Leveraging Foundation Models for the Characterization of Small-RNA Properties. Computational and Structural Biotechnology Journal (CSBJ). DOI: doi.org/10.34133/csbj.0224

    📚 CSBJ - A Science Partner Journal: spj.science.org/journal/csbj

    #RNA #siRNA #RNAtherapeutics #Bioinformatics #ComputationalBiology #DrugDiscovery #MachineLearning #PrecisionMedicine #Genomics #ArtificialIntelligence #FoundationModels

  19. 🤖 What if protein classification errors begin before the AI even starts learning?

    🔗 Vertex Assignment for Frequency Chaos Game Representation of Proteins Affects Classification Performance. Computational and Structural Biotechnology Journal (CSBJ). DOI: doi.org/10.34133/csbj.0225

    📚 CSBJ - A Science Partner Journal: spj.science.org/journal/csbj

    #Bioinformatics #MachineLearning #DeepLearning #Proteomics #ComputationalBiology #ProteinScience #ArtificialIntelligence

  20. 🤖 What if protein classification errors begin before the AI even starts learning?

    🔗 Vertex Assignment for Frequency Chaos Game Representation of Proteins Affects Classification Performance. Computational and Structural Biotechnology Journal (CSBJ). DOI: doi.org/10.34133/csbj.0225

    📚 CSBJ - A Science Partner Journal: spj.science.org/journal/csbj

    #Bioinformatics #MachineLearning #DeepLearning #Proteomics #ComputationalBiology #ProteinScience #ArtificialIntelligence

  21. Researchers have mapped the molecular activity underlying hypertrophic cardiomyopathy (HCM), a disease causing thickening and stiffening of the heart muscle.
    #Cardiology #Genetics #MolecularBiology #ComputationalBiology #sflorg
    sflorg.com/2026/09/med09182601

  22. Researchers have mapped the molecular activity underlying hypertrophic cardiomyopathy (HCM), a disease causing thickening and stiffening of the heart muscle.
    #Cardiology #Genetics #MolecularBiology #ComputationalBiology #sflorg
    sflorg.com/2026/09/med09182601

  23. Researchers have mapped the molecular activity underlying hypertrophic cardiomyopathy (HCM), a disease causing thickening and stiffening of the heart muscle.
    #Cardiology #Genetics #MolecularBiology #ComputationalBiology #sflorg
    sflorg.com/2026/09/med09182601

  24. Researchers have mapped the molecular activity underlying hypertrophic cardiomyopathy (HCM), a disease causing thickening and stiffening of the heart muscle.
    #Cardiology #Genetics #MolecularBiology #ComputationalBiology #sflorg
    sflorg.com/2026/09/med09182601

  25. Delphy is a web-based software application designed to rapidly assemble phylogenetic trees, mapping the evolution and spread of viral variants from genomic sequence data in near-real time.
    #ComputationalBiology #Epidemiology #Genomics #Virology #sflorg
    sflorg.com/2026/09/cobi0916260

  26. Delphy is a web-based software application designed to rapidly assemble phylogenetic trees, mapping the evolution and spread of viral variants from genomic sequence data in near-real time.
    #ComputationalBiology #Epidemiology #Genomics #Virology #sflorg
    sflorg.com/2026/09/cobi0916260

  27. Delphy is a web-based software application designed to rapidly assemble phylogenetic trees, mapping the evolution and spread of viral variants from genomic sequence data in near-real time.
    #ComputationalBiology #Epidemiology #Genomics #Virology #sflorg
    sflorg.com/2026/09/cobi0916260

  28. Delphy is a web-based software application designed to rapidly assemble phylogenetic trees, mapping the evolution and spread of viral variants from genomic sequence data in near-real time.
    #ComputationalBiology #Epidemiology #Genomics #Virology #sflorg
    sflorg.com/2026/09/cobi0916260

  29. If you are interested in how AI can support the development of scientific software, I invite you to attend my workshop at the 71st Annual Meeting of the Biophysical Society in Philadelphia.

    On February 23, 2027, at 7:30 PM, I will present “Developing Scientific Software with AI: Opportunities, Practices, and Pitfalls for Biophysicists.”

    I am grateful for the invitation and look forward to the discussion.

    See you at #BPS2027 #Biophysics #AI #ComputationalBiology

  30. If you are interested in how AI can support the development of scientific software, I invite you to attend my workshop at the 71st Annual Meeting of the Biophysical Society in Philadelphia.

    On February 23, 2027, at 7:30 PM, I will present “Developing Scientific Software with AI: Opportunities, Practices, and Pitfalls for Biophysicists.”

    I am grateful for the invitation and look forward to the discussion.

    See you at #BPS2027 #Biophysics #AI #ComputationalBiology

  31. If you are interested in how AI can support the development of scientific software, I invite you to attend my workshop at the 71st Annual Meeting of the Biophysical Society in Philadelphia.

    On February 23, 2027, at 7:30 PM, I will present “Developing Scientific Software with AI: Opportunities, Practices, and Pitfalls for Biophysicists.”

    I am grateful for the invitation and look forward to the discussion.

    See you at #BPS2027 #Biophysics #AI #ComputationalBiology

  32. If you are interested in how AI can support the development of scientific software, I invite you to attend my workshop at the 71st Annual Meeting of the Biophysical Society in Philadelphia.

    On February 23, 2027, at 7:30 PM, I will present “Developing Scientific Software with AI: Opportunities, Practices, and Pitfalls for Biophysicists.”

    I am grateful for the invitation and look forward to the discussion.

    See you at #BPS2027 #Biophysics #AI #ComputationalBiology

  33. Researchers have identified specific structural features in the spleen, visible on MRI scans, that are associated with an increased risk of coronary artery disease (CAD).
    #Genetics #ComputationalBiology #ArtificialIntelligence (Machine Learning) #Radiology #sflorg
    sflorg.com/2026/09/med09122601

  34. Researchers have identified specific structural features in the spleen, visible on MRI scans, that are associated with an increased risk of coronary artery disease (CAD).
    #Genetics #ComputationalBiology #ArtificialIntelligence (Machine Learning) #Radiology #sflorg
    sflorg.com/2026/09/med09122601

  35. Researchers have identified specific structural features in the spleen, visible on MRI scans, that are associated with an increased risk of coronary artery disease (CAD).
    #Genetics #ComputationalBiology #ArtificialIntelligence (Machine Learning) #Radiology #sflorg
    sflorg.com/2026/09/med09122601

  36. Researchers have identified specific structural features in the spleen, visible on MRI scans, that are associated with an increased risk of coronary artery disease (CAD).
    #Genetics #ComputationalBiology #ArtificialIntelligence (Machine Learning) #Radiology #sflorg
    sflorg.com/2026/09/med09122601

  37. rarelens: building a rare-disease variant triage platform, and the four things I got wrong

    An end-to-end rare-disease variant triage platform: a Nextflow pipeline, three execution backends behind one API call, Terraform for two cloud tracks, and a phenotype-driven ranking measured against 10,178 published cases. Including the model metric that collapsed to exactly random once I removed the feature doing all the work.

    kemal.yaylali.uk/rarelens-tech

  38. rarelens: building a rare-disease variant triage platform, and the four things I got wrong

    An end-to-end rare-disease variant triage platform: a Nextflow pipeline, three execution backends behind one API call, Terraform for two cloud tracks, and a phenotype-driven ranking measured against 10,178 published cases. Including the model metric that collapsed to exactly random once I removed the feature doing all the work.

    kemal.yaylali.uk/rarelens-tech

  39. rarelens: building a rare-disease variant triage platform, and the four things I got wrong

    An end-to-end rare-disease variant triage platform: a Nextflow pipeline, three execution backends behind one API call, Terraform for two cloud tracks, and a phenotype-driven ranking measured against 10,178 published cases. Including the model metric that collapsed to exactly random once I removed the feature doing all the work.

    kemal.yaylali.uk/rarelens-tech

  40. rarelens: building a rare-disease variant triage platform, and the four things I got wrong

    An end-to-end rare-disease variant triage platform: a Nextflow pipeline, three execution backends behind one API call, Terraform for two cloud tracks, and a phenotype-driven ranking measured against 10,178 published cases. Including the model metric that collapsed to exactly random once I removed the feature doing all the work.

    kemal.yaylali.uk/rarelens-tech

  41. Computational Biologist - Fully Remote
    micro1

    Computational Biologists (MSc or PhD) needed for fully remote contract work (up to $120/hour!). Ideally looking for experience in medicinal chemistry

    See the full job description on jobRxiv: jobrxiv.org/job/micro1-27778-c

    ...
    jobrxiv.org/job/micro1-27778-c

  42. 🔬 What if a tumor sample could serve as its own reference?

    🔗 Reference-Free Microsatellite Instability Detection from Tumor Sequencing Using Intrasample Variability Modeling. Computational and Structural Biotechnology Journal (CSBJ). DOI: doi.org/10.34133/csbj.0219

    📚 CSBJ - A Science Partner Journal: spj.science.org/journal/csbj

    #MicrosatelliteInstability #MSI #CancerGenomics #NextGenerationSequencing #ComputationalBiology #Genomics #PersonalizedMedicine #Oncology #Biomarkers #PrecisionMedicine

  43. 🔬 What if a tumor sample could serve as its own reference?

    🔗 Reference-Free Microsatellite Instability Detection from Tumor Sequencing Using Intrasample Variability Modeling. Computational and Structural Biotechnology Journal (CSBJ). DOI: doi.org/10.34133/csbj.0219

    📚 CSBJ - A Science Partner Journal: spj.science.org/journal/csbj

    #MicrosatelliteInstability #MSI #CancerGenomics #NextGenerationSequencing #ComputationalBiology #Genomics #PersonalizedMedicine #Oncology #Biomarkers #PrecisionMedicine

  44. 🔬 What if a tumor sample could serve as its own reference?

    🔗 Reference-Free Microsatellite Instability Detection from Tumor Sequencing Using Intrasample Variability Modeling. Computational and Structural Biotechnology Journal (CSBJ). DOI: doi.org/10.34133/csbj.0219

    📚 CSBJ - A Science Partner Journal: spj.science.org/journal/csbj

    #MicrosatelliteInstability #MSI #CancerGenomics #NextGenerationSequencing #ComputationalBiology #Genomics #PersonalizedMedicine #Oncology #Biomarkers #PrecisionMedicine

  45. 🔬 What if a tumor sample could serve as its own reference?

    🔗 Reference-Free Microsatellite Instability Detection from Tumor Sequencing Using Intrasample Variability Modeling. Computational and Structural Biotechnology Journal (CSBJ). DOI: doi.org/10.34133/csbj.0219

    📚 CSBJ - A Science Partner Journal: spj.science.org/journal/csbj

    #MicrosatelliteInstability #MSI #CancerGenomics #NextGenerationSequencing #ComputationalBiology #Genomics #PersonalizedMedicine #Oncology #Biomarkers #PrecisionMedicine

  46. ⚛️ Would today’s antibiotics still work if bacterial biology were flipped at the molecular level?

    🔗 Molecular Dynamics Simulations Demonstrate Reduced Antibiotic Affinity to Mirror Bacterial Targets. Computational and Structural Biotechnology Journal (CSBJ). DOI: doi.org/10.34133/csbj.0198

    📚 CSBJ - A Science Partner Journal: spj.science.org/journal/csbj

    #MolecularDynamics #Antibiotics #Biosecurity #ComputationalBiology #SyntheticBiology #DrugDiscovery #AntimicrobialResearch #ComputationalChemistry

  47. ⚛️ Would today’s antibiotics still work if bacterial biology were flipped at the molecular level?

    🔗 Molecular Dynamics Simulations Demonstrate Reduced Antibiotic Affinity to Mirror Bacterial Targets. Computational and Structural Biotechnology Journal (CSBJ). DOI: doi.org/10.34133/csbj.0198

    📚 CSBJ - A Science Partner Journal: spj.science.org/journal/csbj

    #MolecularDynamics #Antibiotics #Biosecurity #ComputationalBiology #SyntheticBiology #DrugDiscovery #AntimicrobialResearch #ComputationalChemistry