#codon — Public Fediverse posts
Live and recent posts from across the Fediverse tagged #codon, aggregated by home.social.
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this was the 1st peer-review paper i ever co-authored. truth be told, i was working in the same lab as the lead author, and contributed almost nothing to the manuscript, or the concept behind it! the lead author had already left the lab, and i never met him. but, i was still part of the team, and i learned a lot by helping them with the revisions needed to get this published. also, it's a pretty cool finding even 25 years later! #biology #evolution #codon #genetics
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this was the 1st peer-review paper i ever co-authored. truth be told, i was working in the same lab as the lead author, and contributed almost nothing to the manuscript, or the concept behind it! the lead author had already left the lab, and i never met him. but, i was still part of the team, and i learned a lot by helping them with the revisions needed to get this published. also, it's a pretty cool finding even 25 years later! #biology #evolution #codon #genetics
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`Through genome-wide CRISPR screening, we identified the RNA-binding protein DHX29 as a critical regulator of codon-dependent gene expression. Cryogenic electron microscopy and selective ribosome profiling demonstrated that DHX29 directly interacts with the A-site entrance of the translating 80S ribosome... These findings establish a mechanistic link between synonymous codon usage and the regulation of gene expression.`
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`Through genome-wide CRISPR screening, we identified the RNA-binding protein DHX29 as a critical regulator of codon-dependent gene expression. Cryogenic electron microscopy and selective ribosome profiling demonstrated that DHX29 directly interacts with the A-site entrance of the translating 80S ribosome... These findings establish a mechanistic link between synonymous codon usage and the regulation of gene expression.`
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New tool!
https://keiran-rowell.github.io/assets/interactive/codon-rarity-viewer/
I vibe coded a web app version of my Rare Codon Table #python script🧬 🧮 maps rare codons onto a PDB structure.
I originally wrote a script to find protein codon rarity differences in mammalian -> bacterial expression projects.
🐍 Runs entirely locally via Pyodide — your data never leaves your browser (no server uploads)
Feedback warmly welcomed! Please let me know if there are any issues.
#bioinformatics #codon #structuralbiology #pyodide #WASM #proteins
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New tool!
https://keiran-rowell.github.io/assets/interactive/codon-rarity-viewer/
I vibe coded a web app version of my Rare Codon Table #python script🧬 🧮 maps rare codons onto a PDB structure.
I originally wrote a script to find protein codon rarity differences in mammalian -> bacterial expression projects.
🐍 Runs entirely locally via Pyodide — your data never leaves your browser (no server uploads)
Feedback warmly welcomed! Please let me know if there are any issues.
#bioinformatics #codon #structuralbiology #pyodide #WASM #proteins
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DATE: December 15, 2025 at 05:30PM
SOURCE: BioWorld MedTechDirect article link at end of text block below.
.@alltrna advances #tRNA-based strategy for stop #codon diseases
Here are any URLs found in the article text:
Articles can be found by scrolling down the page at https://www.bioworld.com/topics/85-bioworld-medtech .
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NYU Information for Practice puts out 400-500 good quality health-related research posts per week but its too much for many people, so that bot is limited to just subscribers. You can read it or subscribe at @PsychResearchBot
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Since 1991 The National Psychologist has focused on keeping practicing psychologists current with news, information and items of interest. Check them out for more free articles, resources, and subscription information: https://www.nationalpsychologist.com
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EMAIL DAILY DIGEST OF RSS FEEDS -- SUBSCRIBE:
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READ ONLINE: http://read-the-rss-mega-archive.clinicians-exchange.org
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It's primitive... but it works... mostly...
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-------------------------------------------------#healthcare #healthtech #healthcaretech #healthtechnology #medgadget #medicine #doctor #hospital #medtech
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DATE: December 15, 2025 at 05:30PM
SOURCE: BioWorld MedTechDirect article link at end of text block below.
.@alltrna advances #tRNA-based strategy for stop #codon diseases
Here are any URLs found in the article text:
Articles can be found by scrolling down the page at https://www.bioworld.com/topics/85-bioworld-medtech .
-------------------------------------------------
Private, vetted email list for mental health professionals: https://www.clinicians-exchange.org
.
NYU Information for Practice puts out 400-500 good quality health-related research posts per week but its too much for many people, so that bot is limited to just subscribers. You can read it or subscribe at @PsychResearchBot
.
Since 1991 The National Psychologist has focused on keeping practicing psychologists current with news, information and items of interest. Check them out for more free articles, resources, and subscription information: https://www.nationalpsychologist.com
.
EMAIL DAILY DIGEST OF RSS FEEDS -- SUBSCRIBE:
http://subscribe-article-digests.clinicians-exchange.org
.
READ ONLINE: http://read-the-rss-mega-archive.clinicians-exchange.org
.
It's primitive... but it works... mostly...
.
-------------------------------------------------#healthcare #healthtech #healthcaretech #healthtechnology #medgadget #medicine #doctor #hospital #medtech
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The human Timeless gene 🧬
- 14 base pairs starting from the start codon 😊
- A (yellow), T (red), G (green), C (white) 😉Creator - Chiaki Noguchi 🥳
Photo Credit - Chiaki Noguchi 🥳#DNA #Codon #Science #Gene #Genetics #MolecularBiology #Photography
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The human Timeless gene 🧬
- 14 base pairs starting from the start codon 😊
- A (yellow), T (red), G (green), C (white) 😉Creator - Chiaki Noguchi 🥳
Photo Credit - Chiaki Noguchi 🥳#DNA #Codon #Science #Gene #Genetics #MolecularBiology #Photography
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#Queuosine-#tRNA promotes sex-dependent learning and memory formation by maintaining #codon-biased translation elongation speed
Francesca Tuorto and coworkers
https://www.embopress.org/doi/full/10.15252/embj.2022112507 -
#Queuosine-#tRNA promotes sex-dependent learning and memory formation by maintaining #codon-biased translation elongation speed
Francesca Tuorto and coworkers
https://www.embopress.org/doi/full/10.15252/embj.2022112507 -
new citation:
`Comprehensive analysis of #codon usage pattern in Eisenia fetida and its correlation with gene expression`
https://www.sciencedirect.com/science/article/abs/pii/S1878818123002116?via%3Dihub
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@mlinksva @mpweiher Still can't find the one I'm looking for, but #codon is another recent "slight superset to a subset" of Python approach as opposed to Mojo's "add new stuff" approach to modifying Python.
docs.exaloop.io/codon/general/…
It looks to me, just at a quick glance, that Mojo syntax additions to Python could have been Python-compatible additions in the form of decorators that are noop or validating at runtime on CPython, perhaps validating on mypy, and allowing tight compilation on mojo.
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@mlinksva @mpweiher Still can't find the one I'm looking for, but #codon is another recent "slight superset to a subset" of Python approach as opposed to Mojo's "add new stuff" approach to modifying Python.
docs.exaloop.io/codon/general/…
It looks to me, just at a quick glance, that Mojo syntax additions to Python could have been Python-compatible additions in the form of decorators that are noop or validating at runtime on CPython, perhaps validating on mypy, and allowing tight compilation on mojo.
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https://github.com/exaloop/codon
#Codon is a high-performance #Python #compiler that compiles Python code to native machine code without any runtime overhead. Codon's performance is typically on par with (and sometimes better than) that of C/C++ -
#Codon
Python-based compiler achieves orders-of-magnitude speedups | MIT News | Massachusetts Institute of Technolo… https://twitter.com/i/web/status/1644340408200335362 #t2m -
#Codon
Python-based compiler achieves orders-of-magnitude speedups | MIT News | Massachusetts Institute of Technolo… https://twitter.com/i/web/status/1644340408200335362 #t2m -
IEEE Spectrun shares my excitment about #MIT's #Codon, a framework to build #Python code into more efficient native binaries using #LLVM: https://spectrum.ieee.org/python-compiler
Not all libraries are available, some have to be modified to be ported, but that's pushing it forward.
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TIL about Codon by this article "MIT Turbocharges Python’s Notoriously Slow Compiler > Codon allows users to write Python code that runs as efficiently as C or C++"
https://spectrum.ieee.org/python-compiler
#python #compiler #codon -
TIL about Codon by this article "MIT Turbocharges Python’s Notoriously Slow Compiler > Codon allows users to write Python code that runs as efficiently as C or C++"
https://spectrum.ieee.org/python-compiler
#python #compiler #codon -
@matdevdug I've never heard of #Codon, but I just checked their #GitHub page, and it sounds very #interesting! 👀
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Du #python 10 à 100 fois plus performant, c'est la promesse de #codon un compileur 🐍 sous stéroïdes : https://news.mit.edu/2023/codon-python-based-compiler-achieve-orders-magnitude-speedups-0314
Code : https://github.com/exaloop/codon -
Du #python 10 à 100 fois plus performant, c'est la promesse de #codon un compileur 🐍 sous stéroïdes : https://news.mit.edu/2023/codon-python-based-compiler-achieve-orders-magnitude-speedups-0314
Code : https://github.com/exaloop/codon -
Python-based compiler achieves orders-of-magnitude speedups
MIT: 'Codon' Compiles Python to Native Machine Code That's Even Faster Than C; more efficiently and effectively while allowing for customization and adaptation #Codon #Software #python #Programming
📰 https://news.mit.edu/2023/codon-python-based-compiler-achieve-orders-magnitude-speedups-0314
:github: https://github.com/exaloop/codon
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Python-based compiler achieves orders-of-magnitude speedups
MIT: 'Codon' Compiles Python to Native Machine Code That's Even Faster Than C; more efficiently and effectively while allowing for customization and adaptation #Codon #Software #python #Programming
📰 https://news.mit.edu/2023/codon-python-based-compiler-achieve-orders-magnitude-speedups-0314
:github: https://github.com/exaloop/codon
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"Python-based compiler achieves orders-of-magnitude speedups
Codon compiles Python code to run more efficiently and effectively while allowing for customization and adaptation to various domains."https://news.mit.edu/2023/codon-python-based-compiler-achieve-orders-magnitude-speedups-0314
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"Python-based compiler achieves orders-of-magnitude speedups
Codon compiles Python code to run more efficiently and effectively while allowing for customization and adaptation to various domains."https://news.mit.edu/2023/codon-python-based-compiler-achieve-orders-magnitude-speedups-0314
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#Codon Looks Very Promising For Super-Fast #Python Code
-- 10~100x faster Python code?!? Very interesting innovation out of @MIT_CSAIL
https://www.phoronix.com/news/Codon-Faster-PythonOriginal tweet : https://twitter.com/phoronix/status/1636667302681669632
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MIT Scientists Create Codon: Python Compiler Rivaling Speed Of C / C++
#Python #MIT #Codon #C #programming #development #News #Science #ComputerScience #Tech #Linux
https://www.theregister.com/2023/03/11/python_codon_compiler/
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MIT Scientists Create Codon: Python Compiler Rivaling Speed Of C / C++
#Python #MIT #Codon #C #programming #development #News #Science #ComputerScience #Tech #Linux
https://www.theregister.com/2023/03/11/python_codon_compiler/
