#celllines — Public Fediverse posts

Release 56 of #Cellosaurus is now available at https://www.cellosaurus.org
This release contains information on 168,970 #celllines and cites 29,972 publications.

Highlights of this release include:
Integration of new patient-derived and commercially available cell line collections further expanding the diversity and coverage of Cellosaurus.

A big thank you to everyone who submitted new cell lines, corrections, and updates that helped improve this release!

Release 55 of #Cellosaurus is ready: https://www.cellosaurus.org
It contains information regarding 167'186 #celllines and cite 29'959 publications.

Release 54 of #Cellosaurus is ready: www.cellosaurus.org
It contains information regarding 167'127 #celllines and cite 29'935 publications.

Release 53 of #Cellosaurus is ready: https://www.cellosaurus.org/
It contains information regarding 165'949 #celllines and cite 29'655 publications. Author name representation has changed from listing the surname followed by initials to a full-name format that spells out the given name(s) in full

Pipeline release! nf-core/drugresponseeval v1.1.0 - Drugresponseeval 1.1.0 - Humongous Zapdos!

Please see the changelog: https://github.com/nf-core/drugresponseeval/releases/tag/1.1.0

#celllines #crossvalidation #deeplearning #drugresponse #drugresponseprediction #drugs #fairprinciples #generalization #hyperparametertuning #machinelearning #randomizationtests #robustnessassessment #training #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/drugresponseeval v1.1.0 - Drugresponseeval 1.1.0 - Humongous Zapdos!

Please see the changelog: https://github.com/nf-core/drugresponseeval/releases/tag/1.1.0

#celllines #crossvalidation #deeplearning #drugresponse #drugresponseprediction #drugs #fairprinciples #generalization #hyperparametertuning #machinelearning #randomizationtests #robustnessassessment #training #nfcore #openscience #nextflow #bioinformatics

💡 Want to make the most of cell line data? Join this #BC2Basel tutorial to explore Cellosaurus, from ontologies to APIs to real-world use cases.

🔹Taught by Amos Bairoch & Pierre-André Michel (SIB).

📅 Mon 8 Sep at #bc2

👉Register: tinyurl.com/5n8w3pwb

#bioinformatics #Cellosaurus #celllines #lifesciences #FAIRdata

💡 Want to make the most of cell line data? Join this #BC2Basel tutorial to explore Cellosaurus, from ontologies to APIs to real-world use cases.

🔹Taught by Amos Bairoch & Pierre-André Michel (SIB).

📅 Mon 8 Sep at #bc2

👉Register: tinyurl.com/5n8w3pwb

#bioinformatics #Cellosaurus #celllines #lifesciences #FAIRdata

Research on the #bat innate #ImmuneResponse to pathogens is hindered by a lack of lab reagents. @FViromics @sci_questions &co generate new bat #CellLines, enabling studies on viral susceptibility & immune responses @PLOSBiology https://plos.io/4jkXukf

Research on the #bat innate #ImmuneResponse to pathogens is hindered by a lack of lab reagents. @FViromics @sci_questions &co generate new bat #CellLines, enabling studies on viral susceptibility & immune responses @PLOSBiology https://plos.io/4jkXukf

Release 52 of #Cellosaurus is ready: https://cellosaurus.org
It contains information regarding 163'868 #celllines and cite 29'267 publications.

Pipeline release! nf-core/drugresponseeval v1.0.0 - 1.0.0!

Please see the changelog: https://github.com/nf-core/drugresponseeval/releases/tag/1.0.0

#celllines #crossvalidation #deeplearning #drugresponse #drugresponseprediction #drugs #fairprinciples #generalization #hyperparametertuning #machinelearning #randomizationtests #robustnessassessment #training #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/drugresponseeval v1.0.0 - 1.0.0!

Please see the changelog: https://github.com/nf-core/drugresponseeval/releases/tag/1.0.0

#celllines #crossvalidation #deeplearning #drugresponse #drugresponseprediction #drugs #fairprinciples #generalization #hyperparametertuning #machinelearning #randomizationtests #robustnessassessment #training #nfcore #openscience #nextflow #bioinformatics

Release 51 of #Cellosaurus is ready: https://cellosaurus.org
It contains information regarding 161'202 #celllines and cite 28'637 publications.

Release 50 of #Cellosaurus is ready: https://www.cellosaurus.org It contains information regarding 159461 #celllines and cite 28313 publications.
Highlights of this release: complete reannotation of genetic integration (formerly "transfected") field.

📢 New BRENDA features!
What’s new? 🧬 gene search and 🖥️ visualization of highest expressing human cell lines 🧫.
Learn more about the new features 👉 https://hub.dsmz.de/#/blog/2024-06-06-brenda

#DSMZDigitalDiversity #BRENDA #database #genes #enzymes #celllines #DSMZCellDive

A new #Cellosaurus "group" comment was introduced a few months ago: "Malaria research cell line". It allows to efficently retrieve the list of #celllines useful for the study of this disease: https://www.cellosaurus.org/search?query=%22Malaria%20research%20cell%20line%22

The Parkinson's Progression Markers Initiative (PPMI) (https://www.ppmi-info.org/)
has submitted to the #Cellosaurus information regarding 386 iPSCs that are highly important for the study of Parkinson’s onset and progression. You can search for these #celllines using the following query pattern: https://www.cellosaurus.org/search?query=%22(PPMI)%22

Release 49 of #Cellosaurus is ready https://cellosaurus.org It contains information regarding 153642 #celllines and cite 27882 publications. Highlights of this release: introduction of plant #celllines, improvements to the XML format.

Release 48 of #Cellosaurus is ready https://cellosaurus.org It contains information regarding 152231 #celllines and cite 27418 publications. Highlights of this release: new cross-references to BioGRID_ORCS and DSHB.

@ECACC has a new version of its web site and its #celllines product pages now include links to the #Cellosaurus Example: https://www.culturecollections.org.uk/nop/product/1411h A big thank you!

Great event - and you might hear about our newish cancercelllines.org, well, #cancer #celllines #genomics resource!

From: @cellosaurus
https://fediscience.org/@cellosaurus/111620630207249556

Great event - and you might hear about our newish cancercelllines.org, well, #cancer #celllines #genomics resource!

From: @cellosaurus
https://fediscience.org/@cellosaurus/111620630207249556

We are pleased to announce more SIB Resources recognized as crucial for the international community by the 🌍 Global Biodata Coalition and ELIXIR 🇪🇺.

🌟 Congratulations to SIB’s teams behind @SWISS_MODEL, ModelArchive, @bgeedb, and @cellosaurus.🌟

This is testament to our commitment to providing high-quality resources for the global life sciences community.

Find out more about how we do this: http://tinyurl.com/3yccpb6k

#geneexpression #celllines #proteomics #proteins #OpenScience

We are pleased to announce more SIB Resources recognized as crucial for the international community by the 🌍 Global Biodata Coalition and ELIXIR 🇪🇺.

🌟 Congratulations to SIB’s teams behind @SWISS_MODEL, ModelArchive, @bgeedb, and @cellosaurus.🌟

This is testament to our commitment to providing high-quality resources for the global life sciences community.

Find out more about how we do this: http://tinyurl.com/3yccpb6k

#geneexpression #celllines #proteomics #proteins #OpenScience

Did you know that five goldfish #celllines https://www.cellosaurus.org/search?query=Masahito were established in the 1980s by a Japanese cancer research group that included Masahito, Prince Hitachi the younger brother of the previous Emperor of Japan?
https://en.wikipedia.org/wiki/Masahito,_Prince_Hitachi

Today, we have reached an important milestone: 150,000 #celllines entries in the #Cellosaurus
Who will be the 1st one to guess the meaning of the color stripes in the illustration below?

Release 47 of #Cellosaurus is ready https://cellosaurus.org It contains information regarding 148681 #celllines and cite 26994 publications. Highlight of this release: new cross-references to cancercelllines.org, GeneCopoeia and Ubigene

Release 46 of #Cellosaurus is ready https://cellosaurus.org It contains information regarding 146062 #celllines and cite 26479 publications. Highlight of this release: enhancement of info on anatomical origin (tissues/organs) and cell type of cell lines.

Release 46 of #Cellosaurus is ready https://cellosaurus.org It contains information regarding 146062 #celllines and cite 26479 publications. Highlight of this release: enhancement of info on anatomical origin (tissues/organs) and cell type of cell lines.

First up after lunch, Soufiane Mourragui on identifying commonalities between #CellLines and #tumors at the #SingleCell level.

Release 45 of #Cellosaurus is ready https://cellosaurus.org It contains information regarding 145368 #celllines and cite 26279 publications. #celllines #bioinformatics #biocuration

In a recent review on insect #celllines (https://www.mdpi.com/2075-4450/14/2/104#B16-insects-14-00104) there is a graphical analysis of the proportion of different insect orders contributing to #Cellosaurus insect cell lines. Not suprisingly lepidoptera and diptera contribute for over 91% of these cell lines

Analysis of 200 glycan datasets for CHO-K1 and CHO-S #celllines: CHOGlycoNET: Comprehensive glycosylation reaction network for CHO cell... https://sciencedirect.com/science/article/pii/S1096717622001586

Kondo's group continues to develop #celllines for rare sarcomas (will be CVCL_C7G0 in next #Cellosaurus release): Establishment and characterization of NCC-DSM1-C1: a novel cell line derived from a patient with desmoid fibromatosis https://pubmed.ncbi.nlm.nih.gov/36629983/

The #Cellosaurus wishes all of its users an happy new year. #celllines #happy2023