#bioschemas — Public Fediverse posts

"BH25DE report: On the path to machine-actionabletraining materials" https://doi.org/10.37044/osf.io/un6cd_v1

"We demonstrated contentfederationvia themTeSS-Xplatform, enabling cross-instanceexchange and preparing for future integration with the EOSC federation. To enhance interop-erability, we indexed relevant ontologies and curated semanticcrosswalksbetween establishedmetadata models, specificallyMoDALIAandSchema.org/Bioschemas."

#schema #bioschemas #BH25DE #biohackathon

"BH25DE report: On the path to machine-actionabletraining materials" https://doi.org/10.37044/osf.io/un6cd_v1

"We demonstrated contentfederationvia themTeSS-Xplatform, enabling cross-instanceexchange and preparing for future integration with the EOSC federation. To enhance interop-erability, we indexed relevant ontologies and curated semanticcrosswalksbetween establishedmetadata models, specificallyMoDALIAandSchema.org/Bioschemas."

#schema #bioschemas #BH25DE #biohackathon

"BH25DE report: On the path to machine-actionabletraining materials" https://doi.org/10.37044/osf.io/un6cd_v1

"We demonstrated contentfederationvia themTeSS-Xplatform, enabling cross-instanceexchange and preparing for future integration with the EOSC federation. To enhance interop-erability, we indexed relevant ontologies and curated semanticcrosswalksbetween establishedmetadata models, specificallyMoDALIAandSchema.org/Bioschemas."

#schema #bioschemas #BH25DE #biohackathon

"BH25DE report: On the path to machine-actionabletraining materials" https://doi.org/10.37044/osf.io/un6cd_v1

"We demonstrated contentfederationvia themTeSS-Xplatform, enabling cross-instanceexchange and preparing for future integration with the EOSC federation. To enhance interop-erability, we indexed relevant ontologies and curated semanticcrosswalksbetween establishedmetadata models, specificallyMoDALIAandSchema.org/Bioschemas."

#schema #bioschemas #BH25DE #biohackathon

"BH25DE report: On the path to machine-actionabletraining materials" https://doi.org/10.37044/osf.io/un6cd_v1

"We demonstrated contentfederationvia themTeSS-Xplatform, enabling cross-instanceexchange and preparing for future integration with the EOSC federation. To enhance interop-erability, we indexed relevant ontologies and curated semanticcrosswalksbetween establishedmetadata models, specificallyMoDALIAandSchema.org/Bioschemas."

#schema #bioschemas #BH25DE #biohackathon

@jpvanacken @djoerd @openwebsearcheu :)

Bioschemas is an extension of schema.org, a JSON-LD-based annotation for websites to support indexing by search engines. It is widely used for creative content, and Bioschemas allows annotation of webpages about which biological and chemical things these pages provide content.

See https://bioschemas.org/

#schemaDotOrg #bioschemas #elixirEurope

@jpvanacken @djoerd @openwebsearcheu :)

Bioschemas is an extension of schema.org, a JSON-LD-based annotation for websites to support indexing by search engines. It is widely used for creative content, and Bioschemas allows annotation of webpages about which biological and chemical things these pages provide content.

See https://bioschemas.org/

#schemaDotOrg #bioschemas #elixirEurope

the ASINA project published a new paper, about making their project output more FAIR. e.g. https://doi.org/10.5281/zenodo.17052010 and context in https://doi.org/10.1016/j.impact.2025.100583

They have been using European Registry of Materials (ERM) identifier, and I have started updating two resources we started during #NanoCommons and #NanoSolveIT: https://nanocommons.github.io/datasets/ and https://nanocommons.github.io/erm-database/ (and still using #bioschemas)

the ASINA project published a new paper, about making their project output more FAIR. e.g. https://doi.org/10.5281/zenodo.17052010 and context in https://doi.org/10.1016/j.impact.2025.100583

They have been using European Registry of Materials (ERM) identifier, and I have started updating two resources we started during #NanoCommons and #NanoSolveIT: https://nanocommons.github.io/datasets/ and https://nanocommons.github.io/erm-database/ (and still using #bioschemas)

What best way to advance a topic than working with friends during a hackathon?

Last week we had two intensive days at @ZBMED improving #Bioschemas website and tutorials, part of @elixir_europe and aligned to metadata efforts at @resdatall @NFDI4DS @NFDI

Still a lot of work to do! Keep tuned to https://bioschemas.org and https://schemas.science to see latest changes.

Maybe next time you can also join us! The more the merrier 🙂

Last week we had tons of amazing discussions on #metadata for #TrainingMaterials #OER during our @NFDI #DiscoRSE #Quadriga #hackathon at @ZBMED

Thanks to all participants!

We worked on crosswalks and mappings including #SchemaOrg #LearningResource @dini @dalia #Bioschemas #AMB #Skills4EOSC

Results will be published in @zenodo_org Keep an eye to our updates on social media if you are interested in the topic.

Last week we had tons of amazing discussions on #metadata for #TrainingMaterials #OER during our @NFDI #DiscoRSE #Quadriga #hackathon at @ZBMED

Thanks to all participants!

We worked on crosswalks and mappings including #SchemaOrg #LearningResource @dini @dalia #Bioschemas #AMB #Skills4EOSC

Results will be published in @zenodo_org Keep an eye to our updates on social media if you are interested in the topic.

Last week we had tons of amazing discussions on #metadata for #TrainingMaterials #OER during our @NFDI #DiscoRSE #Quadriga #hackathon at @ZBMED

Thanks to all participants!

We worked on crosswalks and mappings including #SchemaOrg #LearningResource @dini @dalia #Bioschemas #AMB #Skills4EOSC

Results will be published in @zenodo_org Keep an eye to our updates on social media if you are interested in the topic.

Last week we had tons of amazing discussions on #metadata for #TrainingMaterials #OER during our @NFDI #DiscoRSE #Quadriga #hackathon at @ZBMED

Thanks to all participants!

We worked on crosswalks and mappings including #SchemaOrg #LearningResource @dini @dalia #Bioschemas #AMB #Skills4EOSC

Results will be published in @zenodo_org Keep an eye to our updates on social media if you are interested in the topic.

new blog: "Beilstein journals contain Bioschemas" https://chem-bla-ics.linkedchemistry.info/2025/02/13/beiltein-journal-has-bioschemas.html

"But this announcement is a new step. I like how validation of the chemical structures is part of the approach, and I like how they use the Bioschemas extention of schema.org. The last because they use two Bioschemas types/profiles that contributed to or initiated, respectively: MolecularEntity and ChemicalSubstance."

replies to this post become blog comments.

#chemistry #openscience #schemaorg #bioschemas #ELIXIREurope

new blog: "Beilstein journals contain Bioschemas" https://chem-bla-ics.linkedchemistry.info/2025/02/13/beiltein-journal-has-bioschemas.html

"But this announcement is a new step. I like how validation of the chemical structures is part of the approach, and I like how they use the Bioschemas extention of schema.org. The last because they use two Bioschemas types/profiles that contributed to or initiated, respectively: MolecularEntity and ChemicalSubstance."

replies to this post become blog comments.

#chemistry #openscience #schemaorg #bioschemas #ELIXIREurope

Have you used #Bioschemas to markup your data, tools, training materials or other content? Was it cumbersome, tedious or a joyous experience? Please share your experiences and help us to run the @elixir_europe BioHackathon Europe Project 10 ‘Bioschemas for Mortals’ by completing this survey before 1 November.

#BioHackEU24

Have you used #Bioschemas to markup your data, tools, training materials or other content? Was it cumbersome, tedious or a joyous experience? Please share your experiences and help us to run the @elixir_europe BioHackathon Europe Project 10 ‘Bioschemas for Mortals’ by completing this survey before 1 November.

#BioHackEU24

I couldn't image but in one week the #TS4NFDI hands on workshop in Hannover will be already over.

I'm looking forward to discuss #ontology #mapping approaches including #SSSOM with @cthoyt , @nichtich and Nick Juty from https://fair-impact.eu/ and @bioschemas in Hannover.

There are still a handful free places. If you want to join us at the @tibhannover feel free to register via: https://www.nfdi4chem.de/event/ts4nfdi-community-hands-on-workshop/

#base4nfdi #nfdirocks #nfdi #fairimpact #bioschemas

I couldn't image but in one week the #TS4NFDI hands on workshop in Hannover will be already over.

I'm looking forward to discuss #ontology #mapping approaches including #SSSOM with @cthoyt , @nichtich and Nick Juty from https://fair-impact.eu/ and @bioschemas in Hannover.

There are still a handful free places. If you want to join us at the @tibhannover feel free to register via: https://www.nfdi4chem.de/event/ts4nfdi-community-hands-on-workshop/

#base4nfdi #nfdirocks #nfdi #fairimpact #bioschemas

I couldn't image but in one week the #TS4NFDI hands on workshop in Hannover will be already over.

I'm looking forward to discuss #ontology #mapping approaches including #SSSOM with @cthoyt , @nichtich and Nick Juty from https://fair-impact.eu/ and @bioschemas in Hannover.

There are still a handful free places. If you want to join us at the @tibhannover feel free to register via: https://www.nfdi4chem.de/event/ts4nfdi-community-hands-on-workshop/

#base4nfdi #nfdirocks #nfdi #fairimpact #bioschemas

I couldn't image but in one week the #TS4NFDI hands on workshop in Hannover will be already over.

I'm looking forward to discuss #ontology #mapping approaches including #SSSOM with @cthoyt , @nichtich and Nick Juty from https://fair-impact.eu/ and @bioschemas in Hannover.

There are still a handful free places. If you want to join us at the @tibhannover feel free to register via: https://www.nfdi4chem.de/event/ts4nfdi-community-hands-on-workshop/

#base4nfdi #nfdirocks #nfdi #fairimpact #bioschemas

SemTec #RohitaRavinder presents @ZBMED using #Bioschemas #RO_crates and #Signposting to expose metadata for research artifacts

SemTec #RohitaRavinder presents @ZBMED using #Bioschemas #RO_crates and #Signposting to expose metadata for research artifacts

SemTec #RohitaRavinder presents @ZBMED using #Bioschemas #RO_crates and #Signposting to expose metadata for research artifacts

SemTec #RohitaRavinder presents @ZBMED using #Bioschemas #RO_crates and #Signposting to expose metadata for research artifacts

#Bioschemas community meeting, do not miss it! More details at https://bioschemas.org/

@elixir_europe #metadata #lifesciences

SemTec team @ZBMED in #BHEU23 adding
#Bioschemas
metadata #ROCrates and #Signposting to team pages. Great job Rohitha!

Thanks to project co-leads and team for all support!

#RO_crate, #Signposting and #bioschemas working together at #BHEU23 to improve #FAIR research metadata on the Web

📢
#Bioschemas
community call 2023.10.23 at 15:00 UTC (17:00 CEST) with a talk by
@P_Palagi and Silvano Alba from
@isbsib presenting "SIB implementation of training profiles"
👉https://bioschemas.org

@elixireurope #Metadata #BioinformaticsTraining

okay, the afternoon sessions of #ACSFall2023 are about to begin. I'm attending the "Enhance your Data - Smart Ways to Metadata and Knowledge Graphs" session and will talk about #bioschemas myself (2nd speaker)

okay, the afternoon sessions of #ACSFall2023 are about to begin. I'm attending the "Enhance your Data - Smart Ways to Metadata and Knowledge Graphs" session and will talk about #bioschemas myself (2nd speaker)

the second #ACSFall2023 talk today, with Dr Leyla Jael Castro: "Improving findability on chemical resources with #Bioschemas" 02:25pm - 02:45pm USA / Canada - Pacific - August 13, 2023 | Location: Nikko I (Hotel Nikko San Francisco)"

It will be more fun than the abstract suggest, I promise :)

the second #ACSFall2023 talk today, with Dr Leyla Jael Castro: "Improving findability on chemical resources with #Bioschemas" 02:25pm - 02:45pm USA / Canada - Pacific - August 13, 2023 | Location: Nikko I (Hotel Nikko San Francisco)"

It will be more fun than the abstract suggest, I promise :)

next week #ACSFall2023 will really start, but people are already posting on X. Yes, I am attending, but only remotely. I will give two presentations, one about #chemistry in #wikidata and another one on using #Bioschemas (part of schema.org) for chemicals

I wonder if the hashtag is used in the Fediverse a lot. I will follow it anyway

next week #ACSFall2023 will really start, but people are already posting on X. Yes, I am attending, but only remotely. I will give two presentations, one about #chemistry in #wikidata and another one on using #Bioschemas (part of schema.org) for chemicals

I wonder if the hashtag is used in the Fediverse a lot. I will follow it anyway

Cool (in a geeky bioinformatician kind of way): Bioschemas training profiles: A set of specifications for standardizing training information to facilitate the discovery of training programs and resources with @bffo @P_Palagi and others https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1011120 #bioinformatics #training #bioschemas

Cool (in a geeky bioinformatician kind of way): Bioschemas training profiles: A set of specifications for standardizing training information to facilitate the discovery of training programs and resources with @bffo @P_Palagi and others https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1011120 #bioinformatics #training #bioschemas

Project #5: one of the projects about #bioschemas, this one about the Data Discovery Engine

Project #6: pipeline project, I think, about genome reconstruction. Galaxy, of course

Project#7: FAIR data, with TogoID, MetaStanza. (Need to talk with them, I guess, about @bridgedb and perhaps SSSOM)

#BioHackEU22 3/