#bioimaging — Public Fediverse posts

🔬 A breakthrough for spatial biology? This ultrafast 3D imaging method enables deep whole-organ visualization faster than ever before.

🔗 Rapid 3D Immunolabeling and Light Sheet Microscopy for Quantitative Analysis of Intact Tissues. Computational and Structural Biotechnology Journal (CSBJ). DOI: https://doi.org/10.34133/csbj.0121

📚 CSBJ - A Science Partner Journal: https://spj.science.org/journal/csbj

#Bioimaging #3DImaging #LightSheetMicroscopy #TissueBiology #Microscopy #CellBiology #SpatialBiology #Histology

🔬 A breakthrough for spatial biology? This ultrafast 3D imaging method enables deep whole-organ visualization faster than ever before.

🔗 Rapid 3D Immunolabeling and Light Sheet Microscopy for Quantitative Analysis of Intact Tissues. Computational and Structural Biotechnology Journal (CSBJ). DOI: https://doi.org/10.34133/csbj.0121

📚 CSBJ - A Science Partner Journal: https://spj.science.org/journal/csbj

#Bioimaging #3DImaging #LightSheetMicroscopy #TissueBiology #Microscopy #CellBiology #SpatialBiology #Histology

Thank you to organisers @fran_bottanelli, @guijacquemet, Michael Way and Giulia Zanetti and everyone who joined us at this week's Journal of Cell Science meeting on 'Imaging Cell Dynamics'.
https://journals.biologists.com/jcs

#JCSimaging #imaging #biology #bioimaging #CellBiology

Thank you to organisers @fran_bottanelli, @guijacquemet, Michael Way and Giulia Zanetti and everyone who joined us at this week's Journal of Cell Science meeting on 'Imaging Cell Dynamics'.
https://journals.biologists.com/jcs

#JCSimaging #imaging #biology #bioimaging #CellBiology

Thank you to organisers @fran_bottanelli, @guijacquemet, Michael Way and Giulia Zanetti and everyone who joined us at this week's Journal of Cell Science meeting on 'Imaging Cell Dynamics'.
https://journals.biologists.com/jcs

#JCSimaging #imaging #biology #bioimaging #CellBiology

Thank you to organisers @fran_bottanelli, @guijacquemet, Michael Way and Giulia Zanetti and everyone who joined us at this week's Journal of Cell Science meeting on 'Imaging Cell Dynamics'.
https://journals.biologists.com/jcs

#JCSimaging #imaging #biology #bioimaging #CellBiology

Thank you to organisers @fran_bottanelli, @guijacquemet, Michael Way and Giulia Zanetti and everyone who joined us at this week's Journal of Cell Science meeting on 'Imaging Cell Dynamics'.
https://journals.biologists.com/jcs

#JCSimaging #imaging #biology #bioimaging #CellBiology

🔬 New #SpectralUnmixing paper by Ashesh et al. ( @florianjug): A #DeepLearning-based framework #MicroSplit for #FluorescenceMicroscopy that separates highly overlapping #fluorophore signals directly from multiplexed #ImagingData. Improves signal separation, reduces crosstalk, & enables more accurate multi-channel #imaging w/o requiring extensive reference measurements. Can’t wait to try this out on our in vivo #2P/ #3P imaging data:

📝 https://doi.org/10.1038/s41592-026-03082-1

#Bioimaging

🔬 New #SpectralUnmixing paper by Ashesh et al. ( @florianjug): A #DeepLearning-based framework #MicroSplit for #FluorescenceMicroscopy that separates highly overlapping #fluorophore signals directly from multiplexed #ImagingData. Improves signal separation, reduces crosstalk, & enables more accurate multi-channel #imaging w/o requiring extensive reference measurements. Can’t wait to try this out on our in vivo #2P/ #3P imaging data:

📝 https://doi.org/10.1038/s41592-026-03082-1

#Bioimaging

🔬 New #SpectralUnmixing paper by Ashesh et al. ( @florianjug): A #DeepLearning-based framework #MicroSplit for #FluorescenceMicroscopy that separates highly overlapping #fluorophore signals directly from multiplexed #ImagingData. Improves signal separation, reduces crosstalk, & enables more accurate multi-channel #imaging w/o requiring extensive reference measurements. Can’t wait to try this out on our in vivo #2P/ #3P imaging data:

📝 https://doi.org/10.1038/s41592-026-03082-1

#Bioimaging

🔬 New #SpectralUnmixing paper by Ashesh et al. ( @florianjug): A #DeepLearning-based framework #MicroSplit for #FluorescenceMicroscopy that separates highly overlapping #fluorophore signals directly from multiplexed #ImagingData. Improves signal separation, reduces crosstalk, & enables more accurate multi-channel #imaging w/o requiring extensive reference measurements. Can’t wait to try this out on our in vivo #2P/ #3P imaging data:

📝 https://doi.org/10.1038/s41592-026-03082-1

#Bioimaging

🔬 New #SpectralUnmixing paper by Ashesh et al. ( @florianjug): A #DeepLearning-based framework #MicroSplit for #FluorescenceMicroscopy that separates highly overlapping #fluorophore signals directly from multiplexed #ImagingData. Improves signal separation, reduces crosstalk, & enables more accurate multi-channel #imaging w/o requiring extensive reference measurements. Can’t wait to try this out on our in vivo #2P/ #3P imaging data:

📝 https://doi.org/10.1038/s41592-026-03082-1

#Bioimaging

Deadline is this Friday 1 May to submit your research to the JCS special issue: Imaging Cell Architecture and Dynamics
#imaging #cellbiology #bioimaging https://journals.biologists.com/jcs/pages/imaging

🧬 How can AI bridge the gap between histology and spatial transcriptomics?

🔗 SegDecon bridges histology and transcriptomics through AI-based nuclei segmentation and image-informed spatial deconvolution. Computational and Structural Biotechnology Journal, DOI: https://doi.org/10.1016/j.csbj.2025.10.041

📚 CSBJ: https://www.csbj.org/

#SpatialTranscriptomics #Histology #Genomics #SystemsBiology #NucleiSegmentation #AI #CellBiology #TissueBiology #Bioimaging

🧬 How can AI bridge the gap between histology and spatial transcriptomics?

🔗 SegDecon bridges histology and transcriptomics through AI-based nuclei segmentation and image-informed spatial deconvolution. Computational and Structural Biotechnology Journal, DOI: https://doi.org/10.1016/j.csbj.2025.10.041

📚 CSBJ: https://www.csbj.org/

#SpatialTranscriptomics #Histology #Genomics #SystemsBiology #NucleiSegmentation #AI #CellBiology #TissueBiology #Bioimaging

New tutorial from the Galaxy Training Network! Learn how to quantify gel electrophoresis bands using QuPath + Galaxy. Fully open, reproducible, and beginner-friendly.
https://training.galaxyproject.org/training-material/news/2025/08/18/bands_image_analysis.html

@galaxyfreiburg
#Bioinformatics #ImageAnalysis #GelElectrophoresis #OpenScience #ReproducibleResearch #GalaxyProject #QuPath #Bioimaging #LifeSciences #OpenSourceTools #ScienceEducation #DataAnalysis #ResearchTools

New tutorial from the Galaxy Training Network! Learn how to quantify gel electrophoresis bands using QuPath + Galaxy. Fully open, reproducible, and beginner-friendly.
https://training.galaxyproject.org/training-material/news/2025/08/18/bands_image_analysis.html

@galaxyfreiburg
#Bioinformatics #ImageAnalysis #GelElectrophoresis #OpenScience #ReproducibleResearch #GalaxyProject #QuPath #Bioimaging #LifeSciences #OpenSourceTools #ScienceEducation #DataAnalysis #ResearchTools

New tutorial from the Galaxy Training Network! Learn how to quantify gel electrophoresis bands using QuPath + Galaxy. Fully open, reproducible, and beginner-friendly.
https://training.galaxyproject.org/training-material/news/2025/08/18/bands_image_analysis.html

@galaxyfreiburg
#Bioinformatics #ImageAnalysis #GelElectrophoresis #OpenScience #ReproducibleResearch #GalaxyProject #QuPath #Bioimaging #LifeSciences #OpenSourceTools #ScienceEducation #DataAnalysis #ResearchTools

New tutorial from the Galaxy Training Network! Learn how to quantify gel electrophoresis bands using QuPath + Galaxy. Fully open, reproducible, and beginner-friendly.
https://training.galaxyproject.org/training-material/news/2025/08/18/bands_image_analysis.html

@galaxyfreiburg
#Bioinformatics #ImageAnalysis #GelElectrophoresis #OpenScience #ReproducibleResearch #GalaxyProject #QuPath #Bioimaging #LifeSciences #OpenSourceTools #ScienceEducation #DataAnalysis #ResearchTools

New tutorial from the Galaxy Training Network! Learn how to quantify gel electrophoresis bands using QuPath + Galaxy. Fully open, reproducible, and beginner-friendly.
https://training.galaxyproject.org/training-material/news/2025/08/18/bands_image_analysis.html

@galaxyfreiburg
#Bioinformatics #ImageAnalysis #GelElectrophoresis #OpenScience #ReproducibleResearch #GalaxyProject #QuPath #Bioimaging #LifeSciences #OpenSourceTools #ScienceEducation #DataAnalysis #ResearchTools

New tutorial from the Galaxy Training Network! Learn how to quantify gel electrophoresis bands using QuPath + Galaxy. Fully open, reproducible, and beginner-friendly.
https://training.galaxyproject.org/training-material/news/2025/08/18/bands_image_analysis.html

@galaxyproject
#Bioinformatics #ImageAnalysis #GelElectrophoresis #OpenScience #ReproducibleResearch #GalaxyProject #QuPath #Bioimaging #LifeSciences #OpenSourceTools #ScienceEducation #DataAnalysis #ResearchTools

New tutorial from the Galaxy Training Network! Learn how to quantify gel electrophoresis bands using QuPath + Galaxy. Fully open, reproducible, and beginner-friendly.
https://training.galaxyproject.org/training-material/news/2025/08/18/bands_image_analysis.html

@galaxyproject
#Bioinformatics #ImageAnalysis #GelElectrophoresis #OpenScience #ReproducibleResearch #GalaxyProject #QuPath #Bioimaging #LifeSciences #OpenSourceTools #ScienceEducation #DataAnalysis #ResearchTools

New tutorial from the Galaxy Training Network! Learn how to quantify gel electrophoresis bands using QuPath + Galaxy. Fully open, reproducible, and beginner-friendly.
https://training.galaxyproject.org/training-material/news/2025/08/18/bands_image_analysis.html

@galaxyproject
#Bioinformatics #ImageAnalysis #GelElectrophoresis #OpenScience #ReproducibleResearch #GalaxyProject #QuPath #Bioimaging #LifeSciences #OpenSourceTools #ScienceEducation #DataAnalysis #ResearchTools

New tutorial from the Galaxy Training Network! Learn how to quantify gel electrophoresis bands using QuPath + Galaxy. Fully open, reproducible, and beginner-friendly.
https://training.galaxyproject.org/training-material/news/2025/08/18/bands_image_analysis.html

@galaxyproject
#Bioinformatics #ImageAnalysis #GelElectrophoresis #OpenScience #ReproducibleResearch #GalaxyProject #QuPath #Bioimaging #LifeSciences #OpenSourceTools #ScienceEducation #DataAnalysis #ResearchTools

New tutorial from the Galaxy Training Network! Learn how to quantify gel electrophoresis bands using QuPath + Galaxy. Fully open, reproducible, and beginner-friendly.
https://training.galaxyproject.org/training-material/news/2025/08/18/bands_image_analysis.html

@galaxyproject
#Bioinformatics #ImageAnalysis #GelElectrophoresis #OpenScience #ReproducibleResearch #GalaxyProject #QuPath #Bioimaging #LifeSciences #OpenSourceTools #ScienceEducation #DataAnalysis #ResearchTools

On Day 2 of European Galaxy Days, Beatriz Serrano-Solano presented Update by the Imaging Community.
Read more: https://galaxyproject.org/community/sig/image-analysis/

@galaxyfreiburg
#imaging_community #bioimaging #EGD2025 #galaxyproject #eosc #fair #community #open_science

Wir haben #Omero in die Testphase an der #GoetheUniversität und erproben nun den Betrieb 💪 #Forschungsdaten #Bioimaging #ResearchData #GoetheUniversity https://www.ub.uni-frankfurt.de/forschungsdaten/omero.html

Wir haben #Omero in die Testphase an der #GoetheUniversität und erproben nun den Betrieb 💪 #Forschungsdaten #Bioimaging #ResearchData #GoetheUniversity https://www.ub.uni-frankfurt.de/forschungsdaten/omero.html

Wir haben #Omero in die Testphase an der #GoetheUniversität und erproben nun den Betrieb 💪 #Forschungsdaten #Bioimaging #ResearchData #GoetheUniversity https://www.ub.uni-frankfurt.de/forschungsdaten/omero.html

Wir haben #Omero in die Testphase an der #GoetheUniversität und erproben nun den Betrieb 💪 #Forschungsdaten #Bioimaging #ResearchData #GoetheUniversity https://www.ub.uni-frankfurt.de/forschungsdaten/omero.html

Wir haben #Omero in die Testphase an der #GoetheUniversität und erproben nun den Betrieb 💪 #Forschungsdaten #Bioimaging #ResearchData #GoetheUniversity https://www.ub.uni-frankfurt.de/forschungsdaten/omero.html

From Josh Moore, German Bioimaging research software engineer and OME and Zarr developer and maintainer:

🚀 We’re hiring again! Join German BioImaging as a Software Developer!

💻 Build scalable #bioimaging solutions

🌍 Collaborate globally

🎯 Contribute to open science through #OME #Zarr

📣 Tell your #NGFF friends.

Remote, full-time. Apply by 30 June 2025. All submissions via:
https://gerbi-gmb.de/machform/view.php?id=86038

From Josh Moore, German Bioimaging research software engineer and OME and Zarr developer and maintainer:

🚀 We’re hiring again! Join German BioImaging as a Software Developer!

💻 Build scalable #bioimaging solutions

🌍 Collaborate globally

🎯 Contribute to open science through #OME #Zarr

📣 Tell your #NGFF friends.

Remote, full-time. Apply by 30 June 2025. All submissions via:
https://gerbi-gmb.de/machform/view.php?id=86038

From Josh Moore, German Bioimaging research software engineer and OME and Zarr developer and maintainer:

🚀 We’re hiring again! Join German BioImaging as a Software Developer!

💻 Build scalable #bioimaging solutions

🌍 Collaborate globally

🎯 Contribute to open science through #OME #Zarr

📣 Tell your #NGFF friends.

Remote, full-time. Apply by 30 June 2025. All submissions via:
https://gerbi-gmb.de/machform/view.php?id=86038

From Josh Moore, German Bioimaging research software engineer and OME and Zarr developer and maintainer:

🚀 We’re hiring again! Join German BioImaging as a Software Developer!

💻 Build scalable #bioimaging solutions

🌍 Collaborate globally

🎯 Contribute to open science through #OME #Zarr

📣 Tell your #NGFF friends.

Remote, full-time. Apply by 30 June 2025. All submissions via:
https://gerbi-gmb.de/machform/view.php?id=86038

From Josh Moore, German Bioimaging research software engineer and OME and Zarr developer and maintainer:

🚀 We’re hiring again! Join German BioImaging as a Software Developer!

💻 Build scalable #bioimaging solutions

🌍 Collaborate globally

🎯 Contribute to open science through #OME #Zarr

📣 Tell your #NGFF friends.

Remote, full-time. Apply by 30 June 2025. All submissions via:
https://gerbi-gmb.de/machform/view.php?id=86038

🚀 We’re hiring again! Join @GerBI as a Software Developer!

💻 Build scalable #bioimaging solutions

🌍 Collaborate globally

🎯 Contribute to open science through #OME #Zarr

📣 Tell your #NGFF friends.

Remote, full-time. Apply by 30 June 2025: All submissions via http://bit.ly/gerbi-jobs-202505

#getfedihired

https://gerbi-gmb.de/resources/career/

🚀 We’re hiring again! Join @GerBI as a Software Developer!

💻 Build scalable #bioimaging solutions

🌍 Collaborate globally

🎯 Contribute to open science through #OME #Zarr

📣 Tell your #NGFF friends.

Remote, full-time. Apply by 30 June 2025: All submissions via http://bit.ly/gerbi-jobs-202505

#getfedihired

https://gerbi-gmb.de/resources/career/

🚀 We’re hiring again! Join @GerBI as a Software Developer!

💻 Build scalable #bioimaging solutions

🌍 Collaborate globally

🎯 Contribute to open science through #OME #Zarr

📣 Tell your #NGFF friends.

Remote, full-time. Apply by 30 June 2025: All submissions via http://bit.ly/gerbi-jobs-202505

#getfedihired

https://gerbi-gmb.de/resources/career/

🚀 We’re hiring again! Join @GerBI as a Software Developer!

💻 Build scalable #bioimaging solutions

🌍 Collaborate globally

🎯 Contribute to open science through #OME #Zarr

📣 Tell your #NGFF friends.

Remote, full-time. Apply by 30 June 2025: All submissions via http://bit.ly/gerbi-jobs-202505

#getfedihired

https://gerbi-gmb.de/resources/career/

🚀 We’re hiring again! Join @GerBI as a Software Developer!

💻 Build scalable #bioimaging solutions

🌍 Collaborate globally

🎯 Contribute to open science through #OME #Zarr

📣 Tell your #NGFF friends.

Remote, full-time. Apply by 30 June 2025: All submissions via http://bit.ly/gerbi-jobs-202505

#getfedihired

https://gerbi-gmb.de/resources/career/

It was a pleasure to be a speaker at the "Shaping light in space and time for bioimaging" Ph.D. school in Erice! Met a selection of amazing scientists, and had a lot of fun discussing imaging and optics in a great location! #bioimaging #optics

If you train people in ImageJ, Fiji, whatever, even if it isn't your day job, please let us know, and please share this post! Thanks a ton, we really appreciate it. (2/2) forms.gle/C8dUpg8qZkbD... #bioimaging #microscopy #bioimageanalysis

Open Source Bioimage Analysis ...

Bioimaging and bioimage analysis friends, some help if you have 2-3 mins; for a paper, we're trying to estimate the number of biologists trained in open source software or tools in the last ~5 years. (1/2) #bioimaging #microscopy #bioimageanalysis

Bioimaging and bioimage analysis friends, some help if you have 2-3 mins; for a paper, we're trying to estimate the number of biologists trained in open source software or tools in the last ~5 years. (1/2) #bioimaging #microscopy #bioimageanalysis

If you train people in ImageJ, Fiji, whatever, even if it isn't your day job, please let us know, and please share this post! Thanks a ton, we really appreciate it. (2/2) forms.gle/C8dUpg8qZkbD... #bioimaging #microscopy #bioimageanalysis

Open Source Bioimage Analysis ...

Bioimaging and bioimage analysis friends, some help if you have 2-3 mins; for a paper, we're trying to estimate the number of biologists trained in open source software or tools in the last ~5 years. (1/2) #bioimaging #microscopy #bioimageanalysis

If you train people in ImageJ, Fiji, whatever, even if it isn't your day job, please let us know, and please share this post! Thanks a ton, we really appreciate it. (2/2) forms.gle/C8dUpg8qZkbD... #bioimaging #microscopy #bioimageanalysis

Open Source Bioimage Analysis ...

If you train people in ImageJ, Fiji, whatever, even if it isn't your day job, please let us know, and please share this post! Thanks a ton, we really appreciate it. (2/2) forms.gle/C8dUpg8qZkbD... #bioimaging #microscopy #bioimageanalysis

Open Source Bioimage Analysis ...

Bioimaging and bioimage analysis friends, some help if you have 2-3 mins; for a paper, we're trying to estimate the number of biologists trained in open source software or tools in the last ~5 years. (1/2) #bioimaging #microscopy #bioimageanalysis