#bioimage — Public Fediverse posts
Live and recent posts from across the Fediverse tagged #bioimage, aggregated by home.social.
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To wrap this up: Both tools are easy to test. I highly recommend trying them on your own data to see what works best for your use case.
I’ll include #CellSeg3D in our next #Napari #bioimage analysis course (https://www.fabriziomusacchio.com/teaching/teaching_bioimage_analysis/). Curious what impressions and feedback the students will share. 🧪🔍
What I really like about @napari is how well it integrates modern #Python tools. Great to have such a flexible, evolving #opensource platform for (bio) #imageanalysis! 👌
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If you would like to attend a microscopy or bioimage analysis training course in the next 6 months but don’t have funding, check out our Microscopy Training Grant from @J_Cell_Sci and @focalplane_jcs.
Next deadline: 6 June 2025
https://www.biologists.com/grants/jcs-focalplane-training-grants/
#Microscopy #BioimageAnalysis #Bioimage #Biology #Training #Grants
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We're once again hiring a summer (+?) #bioimage #bioimageanalysis #software intern! Due to requirements of the funding program, you must be a current student, as well as work onsite in MA (+ have US work permission). Details at the link below. Spend your summer making great tools with fun people!
Software engineering intern - ... -
I'm bamboozled by OMERO's APIs.
There seems to be an XML model, a Java (slice? blitz?) API that wraps the XML, a Python wrapper for that Java model (omero.model), an official high-level wrapper for that Python wrapper (omero.gateway), and a third party wrapper for that wrapper (ezomero). Then there's also a JSON API.
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Some time ago, we published our #biopixR package in #JOSS
https://social.anoxinon.de/@RoedigerRG/113340746869808933
Now Tim @devTLB and I are working on our review as promised here.
https://social.anoxinon.de/@RoedigerRG/112773962698337008
The good news is, we have done most of the work on it. Now we are just polishing the paper.
We will likely share a link to a preprint server. Let's see how things evolve.
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#FijiSc being prepped to run on #Java 21: give it a try and please report any issues. See the post by Curtis Rueden at the image forum:
https://forum.image.sc/t/jaunch-a-new-java-launcher-test-fiji-with-java-21/92058/1 -
Here is an example of using #RandomForests 🌳🌳 for #PixelClassification 🖼️ in #Python 🐍, using @napari for labeling ✍️
🌎 https://www.fabriziomusacchio.com/blog/2023-06-23-_random_forests_pixel_classifier/
#RandomForest #Napari #MachineLearning #ImageProcessing #Bioimage #BioimageAnalysis
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The BioImage Computing (BIC) workshop is open for submissions.
Where: ICCV conference in Paris.
When: October 3rd.
Submission deadline: July 21st.Website: http://www.bioimagecomputing.com/call-for-papers/
Papers to be published with the ICCV proceedings.
Organized by Jan Funke, Anna Kreshuk, Florian Jug, Alexander Krull, Virgibie Uhlmann, Martin Weigert, Dagmar Kainmueller, Peter Bajcsy.