#biohackeu23 — Public Fediverse posts
Live and recent posts from across the Fediverse tagged #biohackeu23, aggregated by home.social.
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new preprint (likely staying like that): "Rendering co-author graphs using linked-open-data from #Wikidata" https://osf.io/preprints/biohackrxiv/py5jq/ #BioHackEU23
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#BioHackEU23 contributions of our team and some impressions from the event:
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#BioHackEU23 preprint submitted: https://github.com/egonw/biohackathon-europe-wikidata (pending approval)
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today's #BioHackEU23 continues with tweaking and the first bits of report writing. One tweak including adding InChIKey support in the WikIPathways Bioschemas JSON. That means adding @bridgedb into the code base. No problem, but the generation is just a bit slower now.
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updated network, also including more photos of researchers, cc @elixir_europe: https://scholia.toolforge.org/event/Q118733318 #BioHackEU23
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oh, and thanks to all the enthusiasm of people about the @wdscholia co-author map for #BioHackEU23 at https://scholia.toolforge.org/event/Q118733318
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in the end I started using the org.json library, tired of escaping characters.
The #BioDataFuse plugin for #wikidata is done, with the help from the core developers with some Python stream fixing, and now retrieves literature for (human) genes and cellular compartments for their proteins
How was your #BioHackEU23 day?
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Impressive foresight of whoever built this church to include Zoom booths. The adjacent booths were not as comfortable though. #BioHackEU23
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meanwhile, day three of the #BioHackEU23 has started. did not make a lot of progress last night, but did upload the first WikiPathways data dump of Bioschemas
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working on a #wikidata plugin to return articles about genes/proteins and in another project made progress with improved @wikipathways Bioschemas annotation. Oh, and worked a bit on #BioHackEU23 in Wikidata/Scholia
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the second #BioHackEU23 has started and I got a bit more this morning. E.g. got my first steps made in https://github.com/BioDataFuse/pyBiodatafuse
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I think I was follower #3 or such. Absolute coincidence that today #biohackeu23 started.
From: @biocrusoe
https://octodon.social/@biocrusoe/111324178800853324 -
the BioHackathon has started in full anger! so sad to not be on site, but happy to be join in remotely :) #BioHackEU23
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Looking forward to this week's 2023 edition of the @elixir_europe #BioHackEU23 (thanks @egonw for bringing me into the year 2023 ...)
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Ready for #biohackeu23 - just waiting for the others to arrive… https://genomic.social/@mbaudis/111323360791815739 @elixir_europe
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#BioHackEU23 has started. I've joined remotely and listening to the Zoom stream of introductions
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Ready for #biohackeu23 - just waiting for the others to arrive…
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that's going to be a busy but fun #BioHackEU23 week :)
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#BioHackEU23 is getting very close now. Besides following the hashtag, you an also have a look at the @wdscholia profile of the meeting at https://scholia.toolforge.org/event/Q118733318 (but the project leads are not listed yet)