#bh25jp — Public Fediverse posts
Live and recent posts from across the Fediverse tagged #bh25jp, aggregated by home.social.
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"QPX: Pathway analysis environment" https://doi.org/10.37044/osf.io/m37f2_v1
"Building on our work at DBCLS BioHackathon 2023 (BH23), where we introduced QPX and promoted pathway modeling with WikiPathways (Pico et al., 2008) using PathVisio (Kutmon etal., 2015), we now focused on creating new pathway diagrams for diverse species and registering them in WikiPathways with functional annotations. In parallel, we deployed WikiPathways node data into Elasticsearch to enable fast and flexible search and integration of pathway information." https://osf.io/m37f2_v1
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"QPX: Pathway analysis environment" https://doi.org/10.37044/osf.io/m37f2_v1
"Building on our work at DBCLS BioHackathon 2023 (BH23), where we introduced QPX andpromoted pathway modeling with WikiPathways (Pico et al., 2008) using PathVisio (Kutmon etal., 2015), we now focused on creating new pathway diagrams for diverse species and registeringthem in WikiPathways with functional annotations. In parallel, we deployed WikiPathwaysnode data into Elasticsearch to enable fast and flexible search and integration of pathwayinformation." https://doi.org/10.37044/osf.io/m37f2_v1
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"DBCLS BioHackathon 2025 report: Creation and Publication Analytical Workflow of Creators' Interests" https://doi.org/10.37044/osf.io/qd5sz_v1
"At the DBCLS BioHackathon 2025, we converted metatranscriptomic analytical shell scripts into Common Workflow Language (CWL) containerized with Docker. Sub-workflows were created for metagenomic assembly, read mapping, and gene annotation, and validated with test datasets. The workflows, released on GitHub and WorkflowHub, improve reproducibility and address issues of reusability and software environment dependency." https://index.biohackrxiv.org//2025/09/30/qd5sz.html