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605 results for “napari”
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1/ 🚀 Excited to release: napari-mcp - agentic control of napari from any MCP-capable AI assistant! Use it for interactive image processing, analysis, and visualisation! Really cool project from @[email protected] from my team! #napari #bioimageanalysis #MCP @biohub
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🔬 Registration is open for our pilot Introduction to napari Workshop!
napari is a powerful open-source image viewer for scientific data analysis in Python. This hands-on workshop will get you exploring multi-dimensional datasets fast.
✅ Only $20 USD
✅ Limited to 20 people
✅ Perfect for biologists, imaging specialists & data scientistsTwo workshops at two different times.
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Inspired by https://twitter.com/hisadan/status/1699354785441571323?s=20.
Tooted from #napari with #tootapari. -
Playing with an adaptation of the processing code here (https://twitter.com/hisadan/status/1697878658437054785?s=20) to napari.
Tooted from #napari with #tootapari. -
I livestreamed these blobs here: https://mastodon.social/@couldabeensci[email protected]. The #napari hackathon is done and was a success!
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A fun napari script based on this Shadertoy: https://www.shadertoy.com/view/mtyGWy
Code here: https://gist.github.com/kephale/ae62ed52f11409e35fcba75b00992e71
Tooted from #napari with #tootapari.
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@jni @SciPyConf @scipy2023 @napari
@melissawm#napari is SO cool!!!!!
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Fun with Penrose tilings in #napari. Tooted from #napari with #tootapari.
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New Title Alert: Napari-SegSelect- is a plugin for Napari to select a connected component from a Membrain-seg segmentation.
Learn more here: https://napari-hub.org/plugins/napari-segselect
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New Title Alert: Napari-SegSelect- is a plugin for Napari to select a connected component from a Membrain-seg segmentation.
Learn more here: https://napari-hub.org/plugins/napari-segselect
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New Title Alert: Napari-SegSelect- is a plugin for Napari to select a connected component from a Membrain-seg segmentation.
Learn more here: https://napari-hub.org/plugins/napari-segselect
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@melissawm @jni @simon_brooke @hynek @napari
I build them for #PyQtGraph. You use the html builder with a little bit of (emphasis on little) custom css and the sphinx pydata theme looks amazing as a docset. I also disabled sidebars which makes for better viewing in dash.
The longest part was going through all the docs to identify areas that were problematic. I would occasionally identify oddities.
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Adventures in Code VII: getting started with napari
https://quantixed.org/2025/11/04/adventures-in-code-vii-getting-started-with-napari/
#AdventuresInCode #computing #code #microscopy #napari #python
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11/ 🔬🧪 Try it today! pip install napari-chatgpt — GitHub: github.com/royerlab/napari-chatgpt — Paper: doi.org/10.1038/s41592-024-02310-w #Omega #napari #AI #BioImageAnalysis
GitHub - royerlab/napari-chatg... -
From @nvladimus : "We have opened the #mesoSPIM official User Forum" at https://forum.image.sc/tag/mesospim alongside #Fiji #ImageJ #ilastik #BiaPy #napari #DeepLabCut and many other open source softwares for bioimage informatics.
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From @nvladimus : "We have opened the #mesoSPIM official User Forum" at https://forum.image.sc/tag/mesospim alongside #Fiji #ImageJ #ilastik #BiaPy #napari #DeepLabCut and many other open source softwares for bioimage informatics.
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From @nvladimus : "We have opened the #mesoSPIM official User Forum" at https://forum.image.sc/tag/mesospim alongside #Fiji #ImageJ #ilastik #BiaPy #napari #DeepLabCut and many other open source softwares for bioimage informatics.
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From @nvladimus : "We have opened the #mesoSPIM official User Forum" at https://forum.image.sc/tag/mesospim alongside #Fiji #ImageJ #ilastik #BiaPy #napari #DeepLabCut and many other open source softwares for bioimage informatics.
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To wrap this up: Both tools are easy to test. I highly recommend trying them on your own data to see what works best for your use case.
I’ll include #CellSeg3D in our next #Napari #bioimage analysis course (https://www.fabriziomusacchio.com/teaching/teaching_bioimage_analysis/). Curious what impressions and feedback the students will share. 🧪🔍
What I really like about @napari is how well it integrates modern #Python tools. Great to have such a flexible, evolving #opensource platform for (bio) #imageanalysis! 👌
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#FloodWarning
National Weather Service San Francisco CA
705 PM PST Tue Feb 4 2025...The National Weather Service in San Francisco has issued a Flood
Warning for the following rivers in California...#NapaRiver near #StHelena affecting #NapaCounty. #California
.Even though heavy rain has ended the river levels will continue to rise rapidly tonight.
PRECAUTIONARY/PREPAREDNESS ACTIONS: Motorists should not attempt to drive around barricades or drive
cars through flooded areas.Be especially cautious at night when it is harder to recognize the
dangers of flooding.Additional information is available at www.weather.gov.
The next statement will be issued Wednesday morning at 700 AM PST.
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Preprint describing Nellie, a napari plugin for automated organelle segmentation. Results look impressive!
https://arxiv.org/abs/2403.13214
repo (with video): https://github.com/aelefebv/nellie
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I added a new subsection to the #imageregistration chapter, demonstrating how to manually align two 3D (or 2D) stacks using @haesleinhuepf’s grandiose #Napari Assistant 🤘
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We've just finished our course on #Bioimage Analysis with #Napari 🧠🔬, which focusses on the practical application of @napari 🩻🔧. The course material is freely available on my website. Feel free to use and share it! 😙 #OpenScience #ImageAnalysis
🌎 https://www.fabriziomusacchio.com/teaching/teaching_bioimage_analysis/
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I have this silly question about #imagesegmentation. So is there any advantage to using different software for image segmentation? I see #ImageJ, #CellProfiler, #Napari and #Python all can do this, but if the underlying algorithm is the same, then why not just stick with ImageJ?
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Bioimage Analysis course at Pasteur in Paris, by Jean-Yves Tinevez and Jean-christophe Olivo-Marin.
Dates: June 1st-5th, 2026.
Deadline for application: March 1st, 2026.
With two tracks:
* ‘early career investigators track’: aims at mastering the most recent and common image analysis software tools.
* ‘analysts track’: focuses on the use of advanced algorithms and computing resources for bioimage analysis.
https://www.pasteur.fr/en/education/programs-and-courses/pasteur-courses?id_cours=32719
#ImageProcessing #BioimageInformatics #Fiji #Icy #QuPath #Napari #Ilastik #TrackMate
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Bioimage Analysis course at Pasteur in Paris, by Jean-Yves Tinevez and Jean-christophe Olivo-Marin.
Dates: June 1st-5th, 2026.
Deadline for application: March 1st, 2026.
With two tracks:
* ‘early career investigators track’: aims at mastering the most recent and common image analysis software tools.
* ‘analysts track’: focuses on the use of advanced algorithms and computing resources for bioimage analysis.
https://www.pasteur.fr/en/education/programs-and-courses/pasteur-courses?id_cours=32719
#ImageProcessing #BioimageInformatics #Fiji #Icy #QuPath #Napari #Ilastik #TrackMate
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Bioimage Analysis course at Pasteur in Paris, by Jean-Yves Tinevez and Jean-christophe Olivo-Marin.
Dates: June 1st-5th, 2026.
Deadline for application: March 1st, 2026.
With two tracks:
* ‘early career investigators track’: aims at mastering the most recent and common image analysis software tools.
* ‘analysts track’: focuses on the use of advanced algorithms and computing resources for bioimage analysis.
https://www.pasteur.fr/en/education/programs-and-courses/pasteur-courses?id_cours=32719
#ImageProcessing #BioimageInformatics #Fiji #Icy #QuPath #Napari #Ilastik #TrackMate
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Bioimage Analysis course at Pasteur in Paris, by Jean-Yves Tinevez and Jean-christophe Olivo-Marin.
Dates: June 1st-5th, 2026.
Deadline for application: March 1st, 2026.
With two tracks:
* ‘early career investigators track’: aims at mastering the most recent and common image analysis software tools.
* ‘analysts track’: focuses on the use of advanced algorithms and computing resources for bioimage analysis.
https://www.pasteur.fr/en/education/programs-and-courses/pasteur-courses?id_cours=32719
#ImageProcessing #BioimageInformatics #Fiji #Icy #QuPath #Napari #Ilastik #TrackMate
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From @nvladimus : "We have opened the #mesoSPIM official User Forum" at https://forum.image.sc/tag/mesospim alongside #Fiji #ImageJ #ilastik #BiaPy #napari #DeepLabCut and many other open source softwares for bioimage informatics.
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Image analysts: What is your go to method for batch converting image files from the proprietary format to a tiff file? If this should be done at all...
I’ve been using FIJI to open and re-save mine. Although this gives me another look at the image as a QC step, I am using Napari more and more and have found a tiff easier to load into Python.