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31 results for “biplabbose”
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I am slow and lazy. So my project on writing the textbook on computational systems biology is moving at a snail's pace.
The book chapters are here on git: https://github.com/biplabbose/Systems_Biology_TextbookPlease use the materials in your course and give me feedback for improvements.
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Touch-me-not blooming!
It is a creeper that stays close to the ground. But here in Assam, these plants often form dense high bushes with thick stems. The leaves that are away from the ground are not sensitive to touch.
Any clue or reference on this aspect?
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A newbie question on Julia:
Converted a large MC code set in Julia from C. It is a one-to-one mapping from my previous C code, except few vectorizations.
It uses only one library- Random, for rand().
The Julia code is terribly slower than the C code.
Can someone please throw some pointers on this problem?
#Julia #JuliaLanguage #programming #mathbio #computationalbiology
#dynamicalsystems
#statisticalPhysics -
A very useful cheat sheet if want to migrate to Julia but your brain is wired to Matlab:
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"Mathematics Is Biology's Next Microscope ... " -by Joel E. Cohen
This is an old paper, but it provides lots of food for thought.
For example, it boldly states, "In the coming century, biology will stimulate the creation of entirely new realms of mathematics."
It also lists a few of the mathematical developments arising out of biology.
What are your thoughts on the central idea - biology-inspired /driven mathematics?
#mathbio #mathematics #theoreticalbiology
https://journals.plos.org/plosbiology/article?id=10.1371/journal.pbio.0020439
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Christmas gift for me- a nice science coffee table book.
#bookworm #qBio #theory #theoreticalbiology #science #sciencecommunication
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The best thing about an academic job is to enjoy the unspoiled beauty of a bucolic campus every day.
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An interesting paper.
Earlier, numerical approach with random sampling from parameter space had been used to study all sorts of adaptive network motifs.
But this paper uses a different analytical approach.
Design principles for perfect adaptation in biological networks with nonlinear dynamics | bioRxiv
https://www.biorxiv.org/content/10.1101/2022.12.05.519118v1 -
A bit of self-promotion is not harmful 😜
My open online course, "Data Analysis for Biologists," on NPTEL/Swayam, starts on 23 Jan 2023. Free registration is now open:
https://onlinecourses.nptel.ac.in/noc23_bt26/preview
Learn regressions, clustering, classification, dimension reduction, & visualization. All these using R.
Please share this information with prospective learners.
#dataanalysis #machinelearning #biology #nptel #education #onlinecourses
#swayam
#NPTEL -
A bit of self-promotion is not harmful 😜
My open online course, "Data Analysis for Biologists," on NPTEL/Swayam, starts on 23 Jan 2023. Free registration is now open:
https://onlinecourses.nptel.ac.in/noc23_bt26/preview
Learn regressions, clustering, classification, dimension reduction, & visualization. All these using R.
Please share this information with prospective learners.
#dataanalysis #machinelearning #biology #nptel #education #onlinecourses
#swayam
#NPTEL -
A bit of self-promotion is not harmful 😜
My open online course, "Data Analysis for Biologists," on NPTEL/Swayam, starts on 23 Jan 2023. Free registration is now open:
https://onlinecourses.nptel.ac.in/noc23_bt26/preview
Learn regressions, clustering, classification, dimension reduction, & visualization. All these using R.
Please share this information with prospective learners.
#dataanalysis #machinelearning #biology #nptel #education #onlinecourses
#swayam
#NPTEL -
As lots of new language models crop up, social media is abuzz again with "AI and doomsday" discussions
Answers to questions on 'ethics,' 'values,' etc., are littered with circular logic and self-referential statements. Honestly, I am always confused while following these debates. It is often much easier to follow my own beliefs without argument.
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This is interesting: periodic spatial pattern formation by reaction-diffusion involving one morphogen.
https://www.cell.com/cell-systems/fulltext/S2405-4712(22)00436-7?utm_source=pocket_mylist
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Here are a few jewels from this excellent article:
"At its core, statistics is about evaluating the uncertainty of estimates and how that uncertainty impacts inferences and decision making."
"Of course most of us receive some training in statistics, but it’s often so shallow it does more harm than good - a little knowledge can be dangerous if it obscures your own ignorance."
https://statsepi.substack.com/p/im-not-a-real-statistician-and-you
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There are efforts to connect gene expression to cell morphology. But can we consider the mapping from the molecular space (gene expression) to morphological feature space to be Bijective? Possibly not. It could be non-injective also. Any thoughts?
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Suggest a few good examples from mathematical and theoretical biology that can help to convince an uninitiated biologist that theory and mathematical models matter in Biology.
I need a few examples for a general talk to a broader audience of "experimental biologists."
#qBio #mathbio
#QuantitativeBiology
#theoreticalbiology
#ScienceMastodon -
Can someone point me to any literature on the use of Proper Orthogonal Decomposition (POD) /SVD in any dynamical problem other than fluid dynamics? Also excluding the uses in image processing/analysis. Thanks in advance!
#machinelearning #dynamicalsystem
#dynamicalsystems
#modeling
#reducedordermodel
#fluiddynamics -
Now everyone has an opinion on Musk's escapade with Twitter. Here is a piece from Scientific American.
I prefer not to be a political punter and will wait to see how things unfold. Still, this article is interesting - beyond Twitter & Musk.
It nicely explains the differences between a Complicated System ( eg. Car, spacecraft) and Complex System ( eg Social behavior, living systems).
https://www.scientificamerican.com/article/twitter-is-not-rocket-science-its-harder/
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The predominant approach in Biology is - "Let's see what is there in nature."
What if we ask the opposite - "Why don't we observe this particular property/phenomenon in the living system?"
This is something similar to what Bernard Shaw said - "You see things and you say 'Why?' But I dream things that never were and I say 'Why not?'"
Will this approach lead us to develop more 'Theory-driven' research in Biology?
#systemsbiology #theory #theoreticalbiology
#physicalbiology
#biophysics -
Online courses/lectures have, to some extent, democratized education.
The #NPTEL program is one such initiative by the Gov. of India. Possibly, NPTEL is the largest repository of video lectures on #Engineering and #Science.
In Jan 2023, it is offering > 650 courses. All free. It charges a nominal fee only for optional certification exams. All these are freely available on YouTube throughout the year.
#mooc #highereducation #edu #onlinelearning #ScienceMastodon
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Online courses/lectures have, to some extent, democratized education.
The #NPTEL program is one such initiative by the Gov. of India. Possibly, NPTEL is the largest repository of video lectures on #Engineering and #Science.
In Jan 2023, it is offering > 650 courses. All free. It charges a nominal fee only for optional certification exams. All these are freely available on YouTube throughout the year.
#mooc #highereducation #edu #onlinelearning #ScienceMastodon
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Discussion meeting on "Patterns Dynamics Computation" on 5 Dec. The Institute of Mathematical Sciences. Chennai. Live stream on YouTube.
https://pbs.twimg.com/media/FiFQTBWVIAA4uri?format=jpg&name=large
#dynamicalsystems #nonlineardynamics
#statisticalPhysics
#complexity -
Free registration for my online #NPTEL course - "Data Analysis for Biologists" is now open:
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Die Zahl der Menschen und Organisationen, von denen ihr wahrscheinlich schon gehört habt, dass Biplab Basu am vergangenen Donnerstag gestorben ist, macht deutlich, wo er überall riesige Leerstellen hinterlässt.
Auch die KuB hat ihm mehr zu verdanken, als Worte sagen können.
Danke für alles und rest in power, Biplab!
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ReachOut and KOP invite you to remember Biplab with us, to laugh and mourn together. There will be space for personal words and contributions.
When: On 15 April 2024 from 05:00 pm
Where: Nachbarschaftshaus Urbanstraße, Urbanstraße 21, 10961 Berlin. The room is barrier-free
Since Biplab loved Turkish baklava, we would be happy if you bring baklava! ❤️
Biplab will live on in our hearts. We will carry on his resistance and his passion in the fight against racism.
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💥Announcement! Monday 15.04.2024💥
🕯 Commemoration of Biplab Basu 🕯
Monday, 15.04.2024 | 05:00 pm | Nachbarschaftshaus Urbanstraße 21 10961 Berlin
Arrival: M41 Klinikum Am Urban | Bus 140 Urbanstraße/Baerwaldstraße | U7 Südstern
📣 Call: https://asanb.noblogs.org/?p=7372
"It is not light, that we need, but fire;
it is not the gentle shower, but thunder.
We need the storm, the whirlwind, and the earthquake."Frederick Douglass
Invitation to the memorial service on his birthday 🌹
On 14 March 2024, our beloved friend, brother and colleague, Biplab Basu, went on his last journey. Biplab stood by our side as a person, activist, counsellor, civil and human rights activist.
Biplab's life and his vision of social change were inextricably linked and were driven by love, compassion, ingenuity, resilience and humour. Biplab never called it a day. He could be found everywhere, in universities and editorial offices, at rallies and demonstrations, in protest camps and neighbourhoods of solidarity. This never stopped him from doing what he was passionate about: empowering people and giving them courage. His fight against racism and racist police violence has left its mark on us all. Biplab has inspired and touched so many people.
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ReachOut und KOP laden Euch ein, mit uns an Biplab zu erinnern, gemeinsam zu lachen und zu trauern. Es wird Raum für persönliche Worte und Beiträge geben.
Wann: Am 15. April 2024 ab 17:00 Uhr
Wo: Nachbarschaftshaus Urbanstraße, Urbanstraße 21, 10961 Berlin. Der Raum ist barrierefreiDa Biplab türkische Baklava geliebt hat, freuen wir uns, wenn Ihr Baklava mitbringt! ❤️
In unseren Herzen wird Biplab weiter leben. Sein Widerstand und seine Leidenschaft im Kampf gegen Rassismus tragen wir weiter.
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💥Ankündigung! Montag 15.04.2024💥
🕯Gedenkfeier Biplab Basu 🕯
Montag, 15.04.2024 | 17:00 Uhr | Nachbarschaftshaus Urbanstraße 21 10961 Berlin
Anreise: M41 Klinikum Am Urban | Bus 140 Urbanstraße/Baerwaldstraße | U7 Südstern
📣 Aufruf: https://asanb.noblogs.org/?p=7372
"It is not light, that we need, but fire;
it is not the gentle shower, but thunder.
We need the storm, the whirlwind, and the earthquake."Frederick Douglass
Einladung zur Gedenkfeier am Geburtstag 🌹
Am 14.03.2024 ist unser geliebter Freund, Bruder und Kollege, Biplab Basu, auf seine letzte Reise gegangen. An unserer Seite stand Biplab als Mensch, Aktivist, Berater, Bürger- und Menschenrechtler.
Biplabs Leben und seine Vision von einem sozialen Wandel waren untrennbar miteinander verbunden und getragen von Liebe, Mitgefühl, Scharfsinnigkeit, Widerstandskraft und Humor. Biplab machte nie Feierabend. Er war überall zu finden, in Universitäten und Redaktionen, auf Kundgebungen und Demonstrationen, in Protestcamps und solidarischen Kiezen. Nie hielt ihn das davon ab zu tun, was er leidenschaftlich liebte: Menschen zu empowern und ihnen Mut zu machen. Sein Kampf gegen Rassismus und rassistische Polizeigewalt hat uns alle geprägt. So viele Menschen hat Biplab inspiriert und berührt.
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BEST STORY, SCREENPLAY & DIALOGUES
https://youtu.be/FSqeN-_bTLc#thedarkknaik #filmfair #filmfairawards #filmfareawards #bollywood #bestdialogues #pulkit #jyotsananath #bhakshak #snehadesai #divyanidhisharma #laapataaladies #sumukhisuresh #ctrl #riteshshah #iwanttotalk #varungrover #allindiarank #beststory #gajendraahire #thesignature #biplabgoswami #bestscreenplay #ishanibanerjee #kanubehl #despatch #atulsabharwal #berlin #snehadesai #avinashsampath #vikramadityamotwane