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1000 results for “bridgedb”
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BridgeDb Java 3.0.30 is released: https://github.com/bridgedb/BridgeDb/releases/tag/release_3.0.30 https://doi.org/10.5281/zenodo.18157075
"This release updates to BridgeDb Datasources 20260105 adding a few hundred more species and updates various dependencies and Maven plugins."
BridgeDb Java is the library that implements a Java API to access identifier mappings (e.g. from #ChEBI to #Wikidata, or from Ensembl to UniProt) from local files.
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BridgeDb Java 3.0.29 is released: https://github.com/bridgedb/BridgeDb/releases/tag/release_3.0.29
"This update release brings in BridgeDb Datasources 20270728, improves the backwards compatibility with old Apache Derby versions, adds a BridgeDb.getVersion() method, and updates various dependencies."
BridgeDb Java is the library that implements a Java API to access identifier mappings (e.g. from #ChEBI to #Wikidata, or from Ensembl to UniProt) from local files.
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BridgeDb Java 3.0.27 is released: https://github.com/bridgedb/BridgeDb/releases/tag/release_3.0.27
"This update release brings in BridgeDb Datasources 20240725, a new organism (Solanum tuberosum), and various small stability improvements."
BridgeDb Java is the library that implements a Java API to access identifier mappings (e.g. from #ChEBI to #Wikidata, or from Ensembl to UniProt) from local files (there is API support for online services too, but we need help maintaining this code).
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BridgeDb was mentioned today at the #DataReuseDay2024 in Leiden as important solution to integration databases with different identifiers for the same things
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@a000d4f7a91939d0e71df1646d7a48 @torproject I guess someone's doing traffic analysis of #TorBrowser...
Ideally I recommend people to stock up on #TorBridges via #BridgeDB beforehand...
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And yes, I've already tooted about @torproject 's #BridgeDB having need to improvement i.e. being able to filter #TorBridges for ports, type, IPv4 or IPv6 and so on.
I've slowly acquired a list of 49 bridges that I do share with trusted contacts in need...
OFC not the whole one as I want them also get some of their own - decentralization is key...
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And yes, I've already tooted about @torproject 's #BridgeDB having need to improvement i.e. being able to filter #TorBridges for ports, type, IPv4 or IPv6 and so on.
I've slowly acquired a list of 49 bridges that I do share with trusted contacts in need...
OFC not the whole one as I want them also get some of their own - decentralization is key...
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@torproject Not to mention it being used in more and more #Cyberfacist regimes to preemptively detain and harrass and detain people without charges.
And yes, that also happens in the global "west"...
https://mstdn.social/@kkarhan/110533134513076980So let the #Wumao at least work for their sweet entries manually farming #BridgeDB @ https://bridges.torproject.org aka.
http://yq5jjvr7drkjrelzhut7kgclfuro65jjlivyzfmxiq2kyv5lickrl4qd.onion for #TorBridges... -
@torproject Not to mention it being used in more and more #Cyberfacist regimes to preemptively detain and harrass and detain people without charges.
And yes, that also happens in the global "west"...
https://mstdn.social/@kkarhan/110533134513076980So let the #Wumao at least work for their sweet entries manually farming #BridgeDB @ https://bridges.torproject.org aka.
http://yq5jjvr7drkjrelzhut7kgclfuro65jjlivyzfmxiq2kyv5lickrl4qd.onion for #TorBridges... -
Making new connections: from BridgeDB to Rdsys
Telegraph (telegra.ph/Making-new-connecti…)
blog.torproject.org/making-con… -
meanwhile, one @bridgedb feature request implemented: the website now also lists the species common names (if giving on the JSON config files)
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And yes, I've already tooted about @torproject 's #BridgeDB having need to improvement i.e. being able to filter #TorBridges for ports, type, IPv4 or IPv6 and so on.
I've slowly acquired a list of 49 bridges that I do share with trusted contacts in need...
OFC not the whole one as I want them also get some of their own - decentralization is key...
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bringing together a few Dutch #openscience projects at #NOSF2025
We see the Dutch VHP4Safety project, @bridgedb, @elixir_europe TeSS, and the @SURF https://taxila.nl/
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@[email protected] almost there... meanwhile, making a @bridgedb Java 3.1.14 release for PathVisio, the tool we use to make digital biological pathways in @wikipathways
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@a000d4f7a91939d0e71df1646d7a48 @torproject I guess someone's doing traffic analysis of #TorBrowser...
Ideally I recommend people to stock up on #TorBridges via #BridgeDB beforehand...
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@a000d4f7a91939d0e71df1646d7a48 @torproject I guess someone's doing traffic analysis of #TorBrowser...
Ideally I recommend people to stock up on #TorBridges via #BridgeDB beforehand...
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Project #7: fixed a big, had a meeting with @bridgedb, worked on Rhea, and Bgee. They're still looking for more databases to integrate. (Check out https://togoid.dbcls.jp/ !) Btw, "Togo = integration in Japanese" (from the slide)
Project #8: Developing a lesson for the ELIXIR Software Management Plan.
Project #9: FAIR comp models via BioModels. Curated 3 ML models and identified issues. Automated extraction of metadata to server "F"-indable. Using ONNX
#BioHackEU22 4/
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I am attending (online) the #RCIM #ELIXIRMetabolomics #MetabolomicsCommunity #RCI kickoff meeting. @tgx_um has a role in this @elixir_europe Science Tier grant related to semantic technologies (links to @bridgedb and @wikipathways, etc) and outreach (FAIR Cookbook, OER)
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I am attending (online) the #RCIM #ELIXIRMetabolomics #MetabolomicsCommunity #RCI kickoff meeting. @tgx_um has a role in this @elixir_europe Science Tier grant related to semantic technologies (links to @bridgedb and @wikipathways, etc) and outreach (FAIR Cookbook, OER)
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I am attending (online) the #RCIM #ELIXIRMetabolomics #MetabolomicsCommunity #RCI kickoff meeting. @tgx_um has a role in this @elixir_europe Science Tier grant related to semantic technologies (links to @bridgedb and @wikipathways, etc) and outreach (FAIR Cookbook, OER)
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I am attending (online) the #RCIM #ELIXIRMetabolomics #MetabolomicsCommunity #RCI kickoff meeting. @tgx_um has a role in this @elixir_europe Science Tier grant related to semantic technologies (links to @bridgedb and @wikipathways, etc) and outreach (FAIR Cookbook, OER)
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I am attending (online) the #RCIM #ELIXIRMetabolomics #MetabolomicsCommunity #RCI kickoff meeting. @tgx_um has a role in this @elixir_europe Science Tier grant related to semantic technologies (links to @bridgedb and @wikipathways, etc) and outreach (FAIR Cookbook, OER)
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in collaboration with MaCSBio we today start the first #EpiLipidNET training school on Data Analysis Techniques for preprocessed Lipidomics data. This includes the #openscience @wikipathways and @bridgedb projects. See this earlier post: https://social.edu.nl/@bigcat_UM/112024997890956725
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@torproject Not to mention it being used in more and more #Cyberfacist regimes to preemptively detain and harrass and detain people without charges.
And yes, that also happens in the global "west"...
https://mstdn.social/@kkarhan/110533134513076980So let the #Wumao at least work for their sweet entries manually farming #BridgeDB @ https://bridges.torproject.org aka.
http://yq5jjvr7drkjrelzhut7kgclfuro65jjlivyzfmxiq2kyv5lickrl4qd.onion for #TorBridges... -
today's #BioHackEU23 continues with tweaking and the first bits of report writing. One tweak including adding InChIKey support in the WikIPathways Bioschemas JSON. That means adding @bridgedb into the code base. No problem, but the generation is just a bit slower now.
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I am attending the 4th #EpiLipidNET meeting in Toulouse tomorrow and Wednesday. Tomorrow I will demo @wikipathways @bridgedb and #pathvisio and on Wednesday I get to show some of the new things in these projects. I will cover the meeting from this account
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Avalanche Sees Surge in BTC Bridged to Its Network With Over $44 Million in Bitcoin Ported on Thursday
https://news.bitcoin.com/avalanche-sees-surge-in-btc-bridged-to-its-network-with-over-44-million-in-bitcoin-ported-on-thursday/
#decentralizedfinance #lightningnetwork #DigitalCurrency #Uniqueaddresses #VirtualCurrency #bridgedBitcoin #Cryptocurrency #publicchannels #DuneAnalytics #Onchaindata #Blockchain #investment #Avalanche #protocol #transfer #Bitcoin #Bridges #Finance #network -
Avalanche Sees Surge in BTC Bridged to Its Network With Over $44 Million in Bitcoin Ported on Thursday
https://news.bitcoin.com/avalanche-sees-surge-in-btc-bridged-to-its-network-with-over-44-million-in-bitcoin-ported-on-thursday/
#decentralizedfinance #lightningnetwork #DigitalCurrency #Uniqueaddresses #VirtualCurrency #bridgedBitcoin #Cryptocurrency #publicchannels #DuneAnalytics #Onchaindata #Blockchain #investment #Avalanche #protocol #transfer #Bitcoin #Bridges #Finance #network -
Avalanche Sees Surge in BTC Bridged to Its Network With Over $44 Million in Bitcoin Ported on Thursday - According to statistics, the number of bitcoin bridged to the Avalanche blockchain... - https://news.bitcoin.com/avalanche-sees-surge-in-btc-bridged-to-its-network-with-over-44-million-in-bitcoin-ported-on-thursday/ #decentralizedfinance #lightningnetwork #digitalcurrency #uniqueaddresses #virtualcurrency #bridgedbitcoin #cryptocurrency #publicchannels #duneanalytics #onchaindata #news
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Avalanche Sees Surge in BTC Bridged to Its Network With Over $44 Million in Bitcoin Ported on Thursday - According to statistics, the number of bitcoin bridged to the Avalanche blockchain... - https://news.bitcoin.com/avalanche-sees-surge-in-btc-bridged-to-its-network-with-over-44-million-in-bitcoin-ported-on-thursday/ #decentralizedfinance #lightningnetwork #digitalcurrency #uniqueaddresses #virtualcurrency #bridgedbitcoin #cryptocurrency #publicchannels #duneanalytics #onchaindata #news